BAC Information

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BAC

Clone NameMSMg01-157G15
Chromosome1 (Build37)
Map Location 67,568,848 - 67,569,132
singlet/doubletsinglet
Overlap genenone
Upstream geneRpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
Downstream geneKif22-ps, Erbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157G15.T7 (MSMg01no157_g15.b1)MSMg01-157G15.TJ (MSMg01no157_g15.g1)
ACCAG357900AG357901
length740748
length of high quality
(start - end)
250 (426 - 675)287 (63 - 349)
definitionCHROMAT_FILE: MSMg01no157_g15.b1 PHD_FILE: MSMg01no157_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:45 2005CHROMAT_FILE: MSMg01no157_g15.g1 PHD_FILE: MSMg01no157_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACCTG
ATGACTACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTA
ATCATCTTTTACACGCAAATCAAAACAACCCTGAGATTCCACCTCACACC
AGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTG
GATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTT
GTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACAT
AGTACTACCGGATGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAT
TAAGTCCTTCTGCCCCCCACCCACACATGCTCCACTATGTTCATAGCAGC
CTTATTTATAATAGCCAAAAACTGGAAAGAACCTAGATGCCCCTCAACAG
AGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCA
GCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCT
GGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAAACTCACACA
ATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTAGGATACCCAA
GATATAAGATATAATTTGCTAAACACATGATACTCAAGAAGAATGAAGAC
TGAATTGTGGACACTATGCCCCTCCTTAGATTTGGGAACN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTAGTTATTCTTCAATAAAATCTCCCATTTCCTAAAA
TAATTTTAATATTTTTGATCGATAGAACTCACACTGTAATTTGGTGAAAC
ACATTTGCTGTTGGTGGGCTTTTCACGCGACTTGTGCATTATTTATGATC
AATGGGGCTAGGGGCTTATTCACAGTCCTAAAAAAGAAGTGATCAATTTT
TTCAGACTGCCCTATGTATGCCTTTTTGCCTGCCTGCCTTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCTTT
TTTTTTCTCCCCCCCCCCCCCCCTTTATCTTTATCTCTCTTCCTCAAACC
TTCCCTCCTTAATAAAAAAAAAAATCCTAGGGTGCGGCGGGTATCTGAGT
GCCCTCTATTTATAATCCCTGCATATACTACCAGCACTGCTTGTTTCGCT
CACCCGCTATGAATTTACTTCTGCCCCCTTATGCTCATTTCCTTGTAACC
CCCCCCTTCAATCCCCCCCCTTAAATTTTCCTTGCATACCTTAAACATCT
CGTGTTCACGCCTCTCAACTGCTAAAACGTTAAACCCGCTCAAACCGAGT
CTGCTACTCCTCATAATTCTCCCCAACACCCGTCGTCCCATTAACAGCTT
TCACATCTTTATTCCCACTATCTTTCACCCTAACCTTAAACCCCCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_g15.g1 MSMg01no157_g15.g1 CHROMAT_FILE:
MSMg01no157_g15.g1 PHD_FILE: MSMg01no157_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:45 2005
         (287 letters)



>mm_chr1_67568648_67569334
          Length = 687

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagttattcttcaataaaatctcccatttcctaaaataattttaatatttttgatcga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagttattcttcaataaaatctcccatttcctaaaataattttaatatttttgatcga 260

                                                                       
Query: 61  tagaactcacactgtaatttggtgaaacacatttgctgttggtgggcttttcacgcgact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagaactcacactgtaatttggtgaaacacatttgctgttggtgggcttttcacgcgact 320

                                                                       
Query: 121 tgtgcattatttatgatcaatggggctaggggcttattcacagtcctaaaaaagaagtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgcattatttatgatcaatggggctaggggcttattcacagtcctaaaaaagaagtga 380

                                                                       
Query: 181 tcaattttttcagactgccctatgtatgcctttttgcctgcctgccttctctctctctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaattttttcagactgccctatgtatgcctttttgcctgcctgccttctctctctctct 440

                                                        
Query: 241 ctctctctctctctctctctctctctctctctctctccctccctc 285
           ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 ctctctctctctctctctctctctctctctctctctctctccctc 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)