XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
GATCTTTCCAAGACTTTTATCATGAATGGGTGTTGGATCTTTTCAAATGC
TTTTTGCCCATCTAACAAGATGATCATGTGGTTTTTGTCTTTGAGTTTGG
TTATATAATAAATTTCGTTGATGGATTTCCATATATTAAACCATCCCTGC
ATCCCTGGAATAAAATCTACTTGGTGAGGATGGATGTTTGTTTTAATGTG
TTCTTGGATTCGGTTAGCGAGAATTTTATTGAGTATTTTTGCATCGATAT
TCATAAGGGAAATTGGACTGAATTTTCTTTGTTGGATCTTTCTGTGGTTT
ATGTATTATAGTACCTGCGGCTTCATAGAATGAGTTCGGTAGAGTACCTT
CTACTTCTATTTTGTGGAATCGTTTGCACAGAACTGGAATTAGATCTTCT
TTGAAGGTCTGATAGAACTCTGCACTAAACCTATTTGGTCTTGGGCTTTT
TTTGGTTGGGAGACTTAATGACTGCTTCTATTTCTTTAGGGGATATAGGA
CTGTTTAGATCATTAACCTGATCCTGAATTAATTTTGGTACCTGGTATCT
GTCTAGAAAATTTTCCATTTCATCCAGGTTTTCCAGTTTTCTTGAGTATA
GCCTTTTGTAGAAGGATCTGATGCTGCTTTGAATTTTCTCATGATCTGCT
GTTATGCCTTCCTTTTCATTTCCTATTATCT

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGAACAGCCAGGGCTATACAGAGAAACCCTG
TCTCTAAAAACAAACAAACAAAATAAATAAATAAAAACAAAAAACAAAAC
AAAAAAGATGGTGTAGATTTTATGATTTCCACAAATTTTATGTGTTCTCA
TATAGTTTTCAGTCTGAGTATTTTTTTTCTTTTCACTATTCAATTTCAGA
CTTTAAAAATCTTTGCCAGGCTTAAGGCTTTTTCTCTCAGCTATTTCATC
CATTGCATATTTCAGCTACATTTTTGCTTCAGTGCATTCTGCCCACTGCT
CTCAGGTTTCCTGTTCTATGACTTAGACTGCTTATCATAGTAGACACAAC
TTTACTAAAGTCTTACATAATAGTTACCGAACCACAGTGGTACCATTTTT
ATGAGCTTTCTCTTTCTGCAAACTGCTTTTATCTCAGTTGTTTCGATGCT
TTCTCATTGTATATTTATTCTTATTGGTGGTGACAGGGAGGAATAATCAA
AAATTTTACTCTCCTGATTTAAGAAACTTAGTAAAAGGAATGCGTTGATA
ATTATAATTACATGAGGATAAGATTTGGGGATAGGTTTAGGGGAAAGACA
TATTCTATAGTGTTATGATTAGGGCTTTATCTCCTTGAGCCTGTGTCTGG
CCTGAGAAATTCCGAATATTTCTAATTCTTATTTA

Query= MSMg01no157_h11.g1 MSMg01no157_h11.g1 CHROMAT_FILE:
MSMg01no157_h11.g1 PHD_FILE: MSMg01no157_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:49 2005
         (614 letters)



>mm_chr1_97770844_97771857
          Length = 1014

 Score = 1151 bits (595), Expect = 0.0
 Identities = 610/615 (99%), Gaps = 2/615 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaacagccagggctatacagagaaaccctgtctctaaaaacaaacaaacaaaataaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaacagccagggctatacagagaaaccctgtctctaaaaacaaacaaacaaaataaat 260

                                                                       
Query: 61  aaataaaaacaaaaaacaaaacaaaaaagatggtgtagattttatgatttccacaaattt 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 aaataaaaacaaaaaacaaaacaaaaaagatggtatagattttatgatttccacaaattt 320

                                                                       
Query: 121 tatgtgttctcatatagttttcagtctgagtatttttttt-cttttcactattcaatttc 179
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 tatgtgttctcatatagttttcagtctgagtatttttttttcttttcactattcaatttc 380

                                                                       
Query: 180 agactttaaaaatctttgccaggcttaaggctttttctctcagctatttcatccattgca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agactttaaaaatctttgccaggcttaaggctttttctctcagctatttcatccattgca 440

                                                                       
Query: 240 tatttcagctacatttttgcttcagtgcattctgcccactgctctcaggtttcctgttct 299
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 tatttcagctacatttttgcttcagtgcattctgcccactgctctcaggcttcctgttct 500

                                                                       
Query: 300 atgacttagactgcttatcatagtagacacaactttactaaagtcttacataatagttac 359
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 atgacttagactgcttatcatagtagacacaactttactaaagtcttgcataatagttac 560

                                                                       
Query: 360 cgaaccacagtggtaccatttttatgagctttctctttctgcaaactgcttttatctcag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgaaccacagtggtaccatttttatgagctttctctttctgcaaactgcttttatctcag 620

                                                                       
Query: 420 ttgtttcgatgctttctcattgtatatttattcttattggtggtgacagggaggaataat 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgtttcgatgctttctcattgtatatttattcttattggtggtgacagggaggaataat 680

                                                                       
Query: 480 caaaaattttactctcctgatttaagaaacttagtaaaaggaatgcgttgataattataa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caaaaattttactctcctgatttaagaaacttagtaaaaggaatgcgttgataattataa 740

                                                                       
Query: 540 ttacatgaggataagatttggggataggtttaggggaaagacatattctatagtgttatg 599
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 741 ttacatgaggataagatttggggataggtt-aggggaaagacatattctatagtgttatg 799

                          
Query: 600 attagggctttatct 614
           |||||||||||||||
Sbjct: 800 attagggctttatct 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)