BAC Information

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BAC

Clone NameMSMg01-157H17
Chromosome1 (Build37)
Map Location 95,320,970 - 95,384,240
singlet/doubletdoublet
Overlap geneHdlbp, Sept2
Upstream geneLOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g
Downstream geneFarp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157H17.T7 (MSMg01no157_h17.b1)MSMg01-157H17.TJ (MSMg01no157_h17.g1)
ACCAG357951AG357952
length737738
length of high quality
(start - end)
320 (38 - 357)292 (68 - 359)
definitionCHROMAT_FILE: MSMg01no157_h17.b1 PHD_FILE: MSMg01no157_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:50 2005CHROMAT_FILE: MSMg01no157_h17.g1 PHD_FILE: MSMg01no157_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,320,970 - 95,321,285)(95,383,952 - 95,384,240)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGG
TGGATTAAACTGGTTTCTGATAACAGTGATCAGTATAGGCAGAAGACAGT
CCAGGGAAAGGCACACAAGGCAAGAGGCCAACGATAACAAAAGTGCATCC
TGGCCTGGATACTAACGTCAGGGACAGTCAGAGGACAGTTGAAGGCTGGA
CCTCACCTTGGATTACAGTGAAAAGTAAAAATCACTTCCCATAAAACATT
TCTTACAGGGCTGAAGAGATGGCTCAGTGGTTAAGAGGACTGGCTGCTTT
TCCAGAAGACCCGAGTTCAATTCCCAGCGATCACATGGCAGCTCACAACT
GTAACTCCTGTTCCAGGACATCTAACACCCTCACACAGACATAACAAATC
AACTATTTAAAACAAAACAGTTCTTCCAATTTGCGGTTCTTAGCATGGAA
GAGGGCAGAACATGAACTGGAGCTAATTATCAGATCCTAACCAACACTTT
GGACTCTTGAAAGCCGCCAGTGACTTTCATGTGGGGTCGGTCAGGAATCA
CTACAGCATGAACCTCATTACTGGGTGTCCCAGGCCCATAGGGAGTGAGG
CTGCAGGGATTCTCGAGTCTGGCCACACAGAGTTACCTCCTGATGACTTT
TAAAGTCTAGAAATGACAGCCCATCTGTGAAGCTGTAGCCAGGGATATGG
GATCTCTGTTCTCATCTAGCACTTGGGAGTAAGAACN
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAGGCCACCCCTGGATATTTTTCTTGATTTTGT
GGGGTTTTTTGTTTTTTTGGATAGGATCTCTCTATTATGGATCCCTAGCA
ACACTGGGCCAGTTATTTGTCTTGTTAAAGTCTTAAAGAATAAACAATGA
AAGTAACAAGTAGCAACTCAATCAAAGCAGAATACACAGAAGAGGAGACT
ACTAATAACACTGACATCAAACCAAAGGTGAAACGCAGGGCGTGGCTGCA
CACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAG
TTCCAGTATTGCCAGGCCTACCCACAGAAACCCTGTCTCGAAAAACCANA
AAAAAAAAAACCCAAAAAAAAGAAAAAGAAAGGTGAAATTTGAAAAAATA
AATACATATTGGGATAAAACAAACAGACCAAGCCAACAGAGGCAAATGGA
CAGTTTCCGTTGTTGTTTTAAGTCATAGAAGAGTACTTGACAAGAGAAAA
TGTTAACAATATACTTCTATATAAAACATGTAGGATAGAAAACAGTATAT
ACAGTTTAATAGCATTTTTATGGAAAGAAAAATAGCTACATGTATAAAAT
CATGTATAAAAATAAATGTATACACCTCATGCTTATGGTTATTTCTTATA
GTGGAACTGGACGTGATTTACACTTCCCCAAAATAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_h17.b1 MSMg01no157_h17.b1 CHROMAT_FILE:
MSMg01no157_h17.b1 PHD_FILE: MSMg01no157_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:50 2005
         (320 letters)



>mm_chr1_95320766_95321485
          Length = 720

 Score =  580 bits (300), Expect = e-170
 Identities = 312/316 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggtggattaaactggtttctgataacagtgatcagtataggcagaagacagtc 64
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggtggattaaactggtatctgataacagtgatcagtataggcagaagacagtc 264

                                                                       
Query: 65  cagggaaaggcacacaaggcaagaggccaacgataacaaaagtgcatcctggcctggata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagggaaaggcacacaaggcaagaggccaacgataacaaaagtgcatcctggcctggata 324

                                                                       
Query: 125 ctaacgtcagggacagtcagaggacagttgaaggctggacctcaccttggattacagtga 184
           ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 325 ctaacgtcagggacagtcagaggacagctgaaggctggacctcacctcggattacagtga 384

                                                                       
Query: 185 aaagtaaaaatcacttcccataaaacatttcttacagggctgaagagatggctcagtggt 244
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 385 aaagtaaaaatcacttcccataaaacatttcttacagggctggagagatggctcagtggt 444

                                                                       
Query: 245 taagaggactggctgcttttccagaagacccgagttcaattcccagcgatcacatggcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taagaggactggctgcttttccagaagacccgagttcaattcccagcgatcacatggcag 504

                           
Query: 305 ctcacaactgtaactc 320
           ||||||||||||||||
Sbjct: 505 ctcacaactgtaactc 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no157_h17.g1 MSMg01no157_h17.g1 CHROMAT_FILE:
MSMg01no157_h17.g1 PHD_FILE: MSMg01no157_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:50 2005
         (292 letters)



>mm_chr1_95383835_95384526
          Length = 692

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggccacccctggatatttttcttgattttgtggggttttttgtttttttggataggat 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 406 aaggccacccctggatatttttcttgattttgtgggtttttttgtttttttggataggat 347

                                                                       
Query: 61  ctctctattatggatccctagcaacactgggccagttatttgtcttgttaaagtcttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ctctctattatggatccctagcaacactgggccagttatttgtcttgttaaagtcttaaa 287

                                                                       
Query: 121 gaataaacaatgaaagtaacaagtagcaactcaatcaaagcagaatacacagaagaggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gaataaacaatgaaagtaacaagtagcaactcaatcaaagcagaatacacagaagaggag 227

                                                                       
Query: 181 actactaataacactgacatcaaaccaaaggtgaaacgcagggcgtggctgcacacgcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 actactaataacactgacatcaaaccaaaggtgaaacgcagggcgtggctgcacacgcct 167

                                                            
Query: 241 ttaatcccagcacttgggaggcagaggcaggtggatttctgagttccag 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 ttaatcccagcacttgggaggcagaggcaggtggatttctgagttccag 118


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)