BAC Information

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BAC

Clone NameMSMg01-157I12
Chromosome1 (Build37)
Map Location 87,482,941 - 87,483,226
singlet/doubletsinglet
Overlap geneSp110
Upstream geneLOC100040213, LOC100039794, EG665338
Downstream geneSp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157I12.T7 (MSMg01no157_i12.b1)MSMg01-157I12.TJ (MSMg01no157_i12.g1)
ACCAG357989AG357990
length739734
length of high quality
(start - end)
313 (34 - 346)289 (65 - 353)
definitionCHROMAT_FILE: MSMg01no157_i12.b1 PHD_FILE: MSMg01no157_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:53 2005CHROMAT_FILE: MSMg01no157_i12.g1 PHD_FILE: MSMg01no157_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:53 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTACCTT
CTTGTGGCCATCTGAGGGACAGCCATGAGACATGCTTGAGGACTGGGCTG
GGTGAGTGAGTTGGAGAAGGGAAGTAGCCAAGGTGACAAGGCCAACCGTT
CTGTGCCCAGGGCCATTTCTGCCTTCAGGATAAGTCGGTCCTTCTGCATC
AGTCTTGGTGGTTTGCTGTATCACCTGACTGCTGGACCACTTTCCTTCCT
AGGTCCTTCTCCCCCTCCACATGCAACGGATGGAATTCCCCAGGTTTCCA
TCCTTAGCTACAGTCTGTCCAGATGACTAGAGTCACTCTCCTGCTGTTAG
ATCCATCCGTGTCATTAGCCCCATGTGCCTCGCCTCTCCTTAGCTCCTCG
GGTTCTAATGAAAAAAAAAAATATCCTCTGCGACCCACCCTCCAATCGCG
CTCTGCTCCTTCTTTGGAACTATCATTTTATATAACAGGCTCCATATGCC
ACAGACCCGGGGCTTCAGCCTGCCTCTGACTTATCTCTCACCTTCCAAAT
CCATCCCATCGGCAGTTCTATGGATACTCGCTTTAAGTTTATTCAAATTT
TTCCTGCTCCAGTAAGGTCCATCAAAAATTACAAACAAGGAGTTTGGTAA
TTCTTTTTAACTGGTCATATTACCACGAAGCATTCGCAAGGCTGGCCACT
CAACTCCCATGGACGATCCCTTAATATATAAGGCGCCAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAACTATGTTTTTGTCTGTTAATTGTGCACTTGCACG
TGTGTATATGTGTATGATTTAACTCCGAGTTATCTCTCTGATCTCAACCC
TAACCTTTTTAAATGACCAGCTGGGAAGGAAGAAGAGATCAGAGTTTTGA
ACTAGAAGGAGCAAGCTTCAAGGACAAGTGTTAAAATGAGAATTCTTTGA
ATCAGTTCTTGGGAAATTAAGGTAGGGAACAGATAATGTTAGAGCCTAAG
GATGACTTCTGGGCATGAGAAACCAAGAATTTGTGAAGGGAAAACAAGAA
TTTTTTTTGAGCCCACCCCCGACTTGAGCAGCTGGAGTATTGGATCGTTT
GCCTGCTATCCCAGCACTTGAAAGCATCCAGGACCATGGAAAGAACTGAG
GTGGGAGAAAACGGACTTGGAAGGCTTCCAGGAAGCAATGGGGAAACCAA
TGGATGACAGTATCAGAAAGGTCACAGTGTTTTTATCATTATTATCATTA
TCATAATTATGACATTTATCAGTATGTGGAGGTTGGGCATATGTTCCTTG
GTACACATGGAGAGGCCAAGAAACAACTTGTGAGTTGGGTCTGTTCTTCC
ACCATATGGGTTTCAGGGATCAAATTCAGGTCACCAGGCTTGGTGGCAAG
GACCTCGAGCTAGTGAGCCATTTGCCAGACCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_i12.g1 MSMg01no157_i12.g1 CHROMAT_FILE:
MSMg01no157_i12.g1 PHD_FILE: MSMg01no157_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:53 2005
         (289 letters)



>mm_chr1_87482741_87483429
          Length = 689

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactatgtttttgtctgttaattgtgcacttgcacgtgtgtatatgtgtatgatttaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactatgtttttgtctgttaattgtgcacttgcacgtgtgtatatgtgtatgatttaact 260

                                                                       
Query: 61  ccgagttatctctctgatctcaaccctaacctttttaaatgaccagctgggaaggaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccgagttatctctctgatctcaaccctaacctttttaaatgaccagctgggaaggaagaa 320

                                                                       
Query: 121 gagatcagagttttgaactagaaggagcaagcttcaaggacaagtgttaaaatgagaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagatcagagttttgaactagaaggagcaagcttcaaggacaagtgttaaaatgagaatt 380

                                                                       
Query: 181 ctttgaatcagttcttgggaaattaaggtagggaacagataatgttagagcctaaggatg 240
           ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 381 ctttgaatcagttcttgggaaattaagctagggaacagataatggtagagcctaaggatg 440

                                                         
Query: 241 acttctgggcatgagaaaccaagaatttgtgaagggaaaacaagaa 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttctgggcatgagaaaccaagaatttgtgaagggaaaacaagaa 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)