BAC Information

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BAC

Clone NameMSMg01-157L10
Chromosome1 (Build37)
Map Location 58,307,240 - 58,392,651
singlet/doubletdoublet
Overlap geneAox4, Aox3l1
Upstream geneLOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3
Downstream geneEG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157L10.T7 (MSMg01no157_l10.b1)MSMg01-157L10.TJ (MSMg01no157_l10.g1)
ACCAG358119AG358120
length728728
length of high quality
(start - end)
316 (40 - 355)297 (69 - 365)
definitionCHROMAT_FILE: MSMg01no157_l10.b1 PHD_FILE: MSMg01no157_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:06 2005CHROMAT_FILE: MSMg01no157_l10.g1 PHD_FILE: MSMg01no157_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,392,340 - 58,392,651)(58,307,240 - 58,307,535)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TGAGCTGGACTTGCCTCACTGGGTGGCCAAGGTGCTTTGTAAATAGCGGC
ATAGGTAATGGATGGTGCAGCAATCTAAGGCAGTGGTAAAACCAGGTAGG
AAATCAGCTGTGTATGCTCAAGGAATGCCTAATAAAGCATGTTTTGTAAA
CTTATATCATGACAGAATGTCCTAAGGACGCAGTCACAAATTCAAAAAAT
AGAATCATCTACTAGATGCTGCAAACATGTTTAAACAGTGTTTCTACTGC
AGTTGAAAGAAAATGGAGCGACTTGAATAATTTAAATTCACCAGTTAGTG
GACTTCTGTTACACACCACCCTGCAATGCAAAATGGTCAAATTGTTTCTA
AATATTTCTACTACAAAGTGCTGTTCTCATAGCCATGATGTTTGGACATC
ATCTTTCTTTTTCTTTCCCCTTTCCTTTGAGGGATCTCTAAAAATATAAA
TCCTTATTCCTTTTAATAGTGCCTCCCCCCACCCCCAGTGTGTGTGTCTA
CATATGTATGAGTGCACATATGTGTGGTGCCAAAGGATAATGTCAGAAAG
CTTTCTTGATTGTACTTTATTTACTGAGGCGGAGTTTCCTGACAGACCCA
GACCTTACCATTTTGGCTAGTCTTTCTAGACAAGTCGCCTCAGGGACCCC
CTGTCTCCTCCTCCCGGATACTGGGGTT
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAGGCCGGCCTGGTCTACAGAGCTAGTTCCAG
GACAGCCAAGGCTACACAAAGAAACCCTGTCTCAGGGAAGAGAGAGGGAA
CCTCCACTCTTGTGCCTTAAACTCTGTACAATTGACACTGGCTAAACGCT
AACATAATAAAATGGGGCAGATGCCTTTAAAAGTGACCAGGACATCTTGT
GACGTGCCAAGGTATAAGGCAGGGTCCATCTTTCCCTGTAGAACAGTAAC
AGGGTGAAAATCTCAGAAGAGGATTTGAGTGGACATTTCTCCACAGAAAA
CGTGTAAATGACCACCAACCTAAGATTGTGTAAATTACTATTTAAAATCC
AGGTGCAGAGCGTCTCCATGACCTTTGACCATTTATGTTCCCGGATGAAA
AACACGTGATCTTTATATTTTAATCTGCCTTAAGCAGCACAGTAGCTGGG
CAGCTGTCTACCTTCCATGCTGTCAGAATCCATTTCCCTATGGGTAACTC
TGTATTACTTCTTACTACTTACTCTGCTTCATCTGGGCTGCTCTTAGCTA
CCACAGGCCAGCCCACATAACCATGTTGTCTCTACTCCTACCCCACGGCG
GAGGCTCTCTCACTCTCTCCTTCCTGAGCATTCTTCTTCTTCTTCCATGG
TGGCTTCCTCCATCTTCTTTCTGTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_l10.b1 MSMg01no157_l10.b1 CHROMAT_FILE:
MSMg01no157_l10.b1 PHD_FILE: MSMg01no157_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:06 2005
         (316 letters)



>mm_chr1_58392136_58392851
          Length = 716

 Score =  572 bits (296), Expect = e-168
 Identities = 308/312 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgagctggacttgcctcactgggtggccaaggtgctttgtaaatagcggcata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattcatgagctggacttgcctcactgggtggccaaggtgctttgtaaatagcggcata 457

                                                                       
Query: 65  ggtaatggatggtgcagcaatctaaggcagtggtaaaaccaggtaggaaatcagctgtgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ggtaatggatggtgcagcaatctaaggcagtggtaaaaccaggtaggaaatcagctgtgt 397

                                                                       
Query: 125 atgctcaaggaatgcctaataaagcatgttttgtaaacttatatcatgacagaatgtcct 184
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 396 atgctcaaggaatgcctaataaagcatgttttgtaaacttatatcaggacagaatgtcct 337

                                                                       
Query: 185 aaggacgcagtcacaaattcaaaaaatagaatcatctactagatgctgcaaacatgttta 244
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 336 aaggacgcagtcacaaattcaaaaaatagcatcatctactagatgctgcaaacatattta 277

                                                                       
Query: 245 aacagtgtttctactgcagttgaaagaaaatggagcgacttgaataatttaaattcacca 304
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 276 aacagtgtttctactgcagttgaaagaaaatggagtgacttgaataatttaaattcacca 217

                       
Query: 305 gttagtggactt 316
           ||||||||||||
Sbjct: 216 gttagtggactt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no157_l10.g1 MSMg01no157_l10.g1 CHROMAT_FILE:
MSMg01no157_l10.g1 PHD_FILE: MSMg01no157_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:06 2005
         (297 letters)



>mm_chr1_58307040_58307736
          Length = 697

 Score =  572 bits (296), Expect = e-168
 Identities = 296/296 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggccggcctggtctacagagctagttccaggacagccaaggctacacaaagaaaccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggccggcctggtctacagagctagttccaggacagccaaggctacacaaagaaaccct 260

                                                                       
Query: 61  gtctcagggaagagagagggaacctccactcttgtgccttaaactctgtacaattgacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctcagggaagagagagggaacctccactcttgtgccttaaactctgtacaattgacac 320

                                                                       
Query: 121 tggctaaacgctaacataataaaatggggcagatgcctttaaaagtgaccaggacatctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggctaaacgctaacataataaaatggggcagatgcctttaaaagtgaccaggacatctt 380

                                                                       
Query: 181 gtgacgtgccaaggtataaggcagggtccatctttccctgtagaacagtaacagggtgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgacgtgccaaggtataaggcagggtccatctttccctgtagaacagtaacagggtgaa 440

                                                                   
Query: 241 aatctcagaagaggatttgagtggacatttctccacagaaaacgtgtaaatgacca 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatctcagaagaggatttgagtggacatttctccacagaaaacgtgtaaatgacca 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)