Query= MSMg01no157_n17.b1 MSMg01no157_n17.b1 CHROMAT_FILE:
MSMg01no157_n17.b1 PHD_FILE: MSMg01no157_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:17 2005
(502 letters)
>mm_chr1_71328520_71329420
Length = 901
Score = 880 bits (455), Expect = 0.0
Identities = 489/501 (97%), Gaps = 3/501 (0%)
Strand = Plus / Minus
Query: 1 atattcattacagaagatcaaattctcattttccaaagggaagtggcagtgcaagcgagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 699 atattcattacagaagatcaaattctcattttccaaagggaagtggcagtgcaagtgagg 640
Query: 61 taaaccttgggaatacctctgacaggtgaggggaacagggctctctgttcatcagaaatg 120
|| |||| ||||| |||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 639 tagacctggggaacacctctgacaggggagggggacagggctctctgttcatcagaaatg 580
Query: 121 cttctctggatgcgactttctgtgtgatttcagaggcgagcttcacaggtgacgattttt 180
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 579 cttctctggatgcgactttc--tgtgatttcagaggcgagcttcacaggtgacgattttt 522
Query: 181 cctgcattcaagggctgtgcagggacggacacgtttatttagtcaggagccccctgtcgt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 521 cctgcattcaagggctgtgcagggacggacacgtttatttagtcaggagccccctgtcat 462
Query: 241 taggttcatatatgtgggagcaaaatcatccaaaataaagttgtgtttttaagaaatcat 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 461 taggttcatatatgtgggagcaaaatcatccaaaataaagttgtgttttttagaaatcat 402
Query: 301 ccttcgctgggaaaggtgaggtctatcttctatcttccccatctctgattcactctaggt 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 401 ccttcgctgggaaaggtgaggtctatcctctatcttccccatctctgattcactctaggt 342
Query: 361 ggagggc-gggggtggagatttgtttggggtaaagtctatgatttgattaagttagactt 419
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ggagggcagggggtggagatttgtttggggtaaagtctatgatttgattaagttagactt 282
Query: 420 gaaggatactctctgtattaaaatgcttcgtcttcaactcttcacacaggataaatttga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gaaggatactctctgtattaaaatgcttcgtcttcaactcttcacacaggataaatttga 222
Query: 480 aaaatcacatttttgatataa 500
|||||||||||||||||||||
Sbjct: 221 aaaatcacatttttgatataa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 901
Length adjustment: 10
Effective length of query: 492
Effective length of database: 891
Effective search space: 438372
Effective search space used: 438372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no157_n17.g1 MSMg01no157_n17.g1 CHROMAT_FILE:
MSMg01no157_n17.g1 PHD_FILE: MSMg01no157_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:17 2005
(287 letters)
>mm_chr1_71200584_71201270
Length = 687
Score = 545 bits (282), Expect = e-160
Identities = 285/286 (99%)
Strand = Plus / Plus
Query: 1 attccatttgcaatcaccgggtgaacaatcacaatataaagaaatcccgtggcaatcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attccatttgcaatcaccgggtgaacaatcacaatataaagaaatcccgtggcaatcttg 260
Query: 61 ttttcaggctgcctttccatcttaatgccttggatcgcctggatcaaaacagtgcctcgg 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 ttttcaggctgcctttccatcttaatgccttggatcgcctggatcaaaatagtgcctcgg 320
Query: 121 agcagactgggtgccttgtggtacaacagggtttttctatcaggcaggtttgtttatcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcagactgggtgccttgtggtacaacagggtttttctatcaggcaggtttgtttatcca 380
Query: 181 agtgaaatttaaagttgtttcaaaatctggtgtgtatagcactggcctctagagtgaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgaaatttaaagttgtttcaaaatctggtgtgtatagcactggcctctagagtgaagt 440
Query: 241 caataagaaaacagtaggatatttgtggttatttttcctcttataa 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caataagaaaacagtaggatatttgtggttatttttcctcttataa 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
