BAC Information

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BAC

Clone NameMSMg01-157O07
Chromosome1 (Build37)
Map Location 89,528,567 - 89,529,177
singlet/doubletsinglet
Overlap geneInpp5d
Upstream geneNppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2
Downstream geneAtg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157O07.T7 (MSMg01no157_o07.b1)MSMg01-157O07.TJ (MSMg01no157_o07.g1)
ACCAG358252AG358253
length733735
length of high quality
(start - end)
320 (35 - 354)626 (64 - 689)
definitionCHROMAT_FILE: MSMg01no157_o07.b1 PHD_FILE: MSMg01no157_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:20 2005CHROMAT_FILE: MSMg01no157_o07.g1 PHD_FILE: MSMg01no157_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTACT
TTGAGATAGAGTCATGCTTACATACCTTTGGTTAGCTTATAACTCAAAAT
CCTTCCATCTTAGCCTTTGAGTCAAAACTTTTTCTTTTCTTTTTCTTGAG
TCAGGCCTCACTATGTCACTCTGGCTAGCCTGGAACTCCCTACATAGACC
AGGCTGGTCTTTTACTCAGAGTCCATTCGCTTCTGCCTCCTGGGTGCTGG
AATTAGAGAAGTACAACACCACACCTGGCAAAACATTTTCTAAAAAGATT
TACTTTAAAATTGGTTATGTATATGAGCATTTTGTCTGCATGTATGTGCA
TCTTGAATTTGCCCGCGCGCCTGCCTAGGCCTGAAAGGGGGCCCAGCTCT
CCGGAACTGGGATAGATGGTTGTGTGTGGACCTCTGTGTGGGTGCTAAGA
ACTAATCCAGGTTCTTTCCAAGAATAGTGAGTGCTCCTAATCGCTAAGCC
ACATCTCCAGCCACAACGTCGGCTTTTTAAAGATATTTATTTTATGTGTA
TGCCATAGAACATGTCTGTGTACCACTTATATGTAGTACCTACAGAGGCG
CAGAACCTCCTAGAACCAGAGTTACAGTTGTGAACCCCCGTGTGGGTGCT
GGAAATCAAACCCAGATCCTCTACAAGAGCAGCCAGTGCTCCTGATCACT
GAGCCATCTCTCCAGTCCCAAACCTTTTCTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAAAACAGTAAAAGATCATAAAGCTGGCTACATAGAAA
AATATAAATGTATACAGCAACGGAAGGGAACCAACAAACATTGTTGAAAT
GAATATCAAAATCCACAGTAGCATAGATCAGAGTCTTGTCTGATAATAAG
CCCAGGATGATGTTTAAAAAAAACAAAAACAAAAAACAAAAAGCAAAGAG
ATGAAAAGGGATTCAAAGAAAGAAAAAAAAAAAAACAGAAACAGCCAAGA
ACAAGGACAAACCAAAGCTTTCTCGTGGGGAGAGGCAAATTAAGGCAAGC
TGCCTTAGTTCTCCCCCTCTCAGATCTGAAAAGAGATCTGATAAACCAGT
CAGCAGGCTGTGGGGAAGTAGACACTCTCATATCTGTTAGGAGGAAGGAA
AAAAAAAACGGACAGACTCACTGGAGCGCAGCTGTCAGTCTTTATCAAAA
TGTAAAATGCCAGCAAGACATGATGGCTCATACCTGACATCCTAGCACTT
GGGAGGCTGAGGCAGGAGGATTATCTTGTGTCAGAAGCCGACCTAGGCTA
CATAAAAGTGTGCGTGTCCACGCAAGCATGTTTGTAAAGTGCCTATGCCT
TTTTGTCTGGCTGACTCTGTCTAGTTCATTGTTTATTCACATAACTAGCA
ACCCCTGACACGTGTGGTGTCCAGTGTGAGCCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_o07.g1 MSMg01no157_o07.g1 CHROMAT_FILE:
MSMg01no157_o07.g1 PHD_FILE: MSMg01no157_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:20 2005
         (626 letters)



>mm_chr1_89528367_89529392
          Length = 1026

 Score = 1093 bits (565), Expect = 0.0
 Identities = 604/623 (96%), Gaps = 12/623 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaacagtaaaagatcataaagctggctacatagaaaaatataaatgtatacagcaacgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaacagtaaaagatcataaagctggctacatagaaaaatataaatgtatacagcaacgg 260

                                                                       
Query: 61  aagggaaccaacaaacattgttgaaatgaatatcaaaatccacagtagcatagatcagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagggaaccaacaaacattgttgaaatgaatatcaaaatccacagtagcatagatcagag 320

                                                                       
Query: 121 tcttgtctgataataagcccaggatgatgtttaaaaaaaacaaaaacaaaaaacaaaaag 180
           |||||||||||||||||||||||||||||||||||||    |||||||||||||||||||
Sbjct: 321 tcttgtctgataataagcccaggatgatgtttaaaaa----aaaaacaaaaaacaaaaag 376

                                                                       
Query: 181 caaagagatgaaaagggattcaaagaaagaaaaaaaaaaaaacagaaacagccaagaaca 240
           |||||||||| ||||||||||||||       ||||||||||||||||||||||||||||
Sbjct: 377 caaagagatggaaagggattcaaag-------aaaaaaaaaacagaaacagccaagaaca 429

                                                                       
Query: 241 aggacaaaccaaagctttctcgtggggagaggcaaattaaggcaagctgccttagttctc 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 430 aggacaaaccaaacctttctcgtggggagaggcaaattaaggcaagctgccatagttctc 489

                                                                       
Query: 301 cccctctcagatctgaaaagagatctgataaaccagtcagcaggctgtggggaagtagac 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 490 cccctctcagatctgaaaagagatctgataagccagtcagcaggctgtggggaagtagac 549

                                                                       
Query: 361 actctcatatctgttaggaggaaggaaaaaaaaaacggacagactcactggagcgcagct 420
           ||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||
Sbjct: 550 actctcatatctgttaggaggaagg-aaaaaaaacccgacagactcactggagcgcagct 608

                                                                       
Query: 421 gtcagtctttatcaaaatgtaaaatgccagcaagacatgatggctcatacctgacatcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gtcagtctttatcaaaatgtaaaatgccagcaagacatgatggctcatacctgacatcct 668

                                                                       
Query: 481 agcacttgggaggctgaggcaggaggattatcttgtgtcagaagccgacctaggctacat 540
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 agcacttgggagactgaggcaggaggattatcttgtgtcagaagccgacctaggctacat 728

                                                                       
Query: 541 aaaagtgtgcgtgtccacgcaagcatgtttgtaaagtgcctatgcctttttgtctggctg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 aaaagtgtgcgtgtccacgcaagcatgtttgtaaagtgcctatgcctttttgtctggctg 788

                                  
Query: 601 actctgtctagttcattgtttat 623
           |||||||||||||||||||||||
Sbjct: 789 actctgtctagttcattgtttat 811


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)