Query= MSMg01no158_a07.b1 MSMg01no158_a07.b1 CHROMAT_FILE:
MSMg01no158_a07.b1 PHD_FILE: MSMg01no158_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:29 2005
(229 letters)
>mm_chr1_107065168_107065796
Length = 629
Score = 397 bits (205), Expect = e-115
Identities = 223/229 (97%)
Strand = Plus / Plus
Query: 1 catctcctcttcttttacttcatgttgaacataaacacttaatgattctctcattgccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catctcctcttcttttacttcatgttgaacataaacacttaatgattctctcattgccat 260
Query: 61 cttcttccacctaaacagacacacccataagttcagtcgtattcccctaacatcatttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcttccacctaaacagacacacccataagttcagtcgtattcccctaacatcatttta 320
Query: 121 gcatggatttgagtagactgctattcaccctggttcagtctttctgtagcttctggctta 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 gcatggatttgagtagactgctattcaccctggttcagtctttctgtagtttctggctta 380
Query: 181 ctctgtaatattatagtttcctcgaatccacaccatttggaaataaggt 229
|||||||| | | |||||||| ||||||||||||||||||||||||||
Sbjct: 381 ctctgtaagaagacagtttcctggaatccacaccatttggaaataaggt 429
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space: 136400
Effective search space used: 136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no158_a07.g1 MSMg01no158_a07.g1 CHROMAT_FILE:
MSMg01no158_a07.g1 PHD_FILE: MSMg01no158_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:29 2005
(633 letters)
>mm_chr1_107155942_107156974
Length = 1033
Score = 1162 bits (601), Expect = 0.0
Identities = 624/633 (98%), Gaps = 4/633 (0%)
Strand = Plus / Minus
Query: 3 agtttcttggggaccattgacttggtagtcaggtagccaaaggtgggggtacagtatttc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 agtttcttggggaccattgacttggtagtcaggtagccaaaggtgggggtacagtatttc 774
Query: 63 tttagaagagctttgcttccagcagtataattgcacatgaactggatgggtgttttagta 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 tttagaagagctttgcttccagcagtataattgcacatgaactggatgggtgttttagta 714
Query: 123 agtctctctgcaaacagttcacaagaacttgccagcaaaccttctctgccgtgattccct 182
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 713 agtctctctgcaaacagttcacaagaaattgccagcaaaccttctctgcggtgattccct 654
Query: 183 ctaccatgcagaactagaggctgtgctttgtccttacagagttcaatgagataaagcagc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ctaccatgcagaactagaggctgtgctttgtccttacagagttcaatgagataaagcagc 594
Query: 243 caaaaagcctgcatcaaaacaatatagcttcatatccctaagtgctctgcaaatggaaag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 caaaaagcctgcatcaaaacaatatagcttcatatccctaagtgctctgcaaatggaaag 534
Query: 303 tattgttagagcagaactaatctctttactgcagtaagacacagcccatcatgtgc--ac 360
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 533 tattgttagagcaggactaatctctttactgcagtaagacacagcccatcatgtgcatac 474
Query: 361 caatgggtggcatcaactggcttgaggtttgaatggaaaatagatttgaggacaaggcaa 420
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 473 --attggtggcatcaactggcttgaggtttgaatggaaaatagatttgaggacaagacaa 416
Query: 421 gtagttctgtggctacaaataaatgatgtattagcacaataaggaagagctggccttggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gtagttctgtggctacaaataaatgatgtattagcacaataaggaagagctggccttggc 356
Query: 481 agttcagaacgtcctcacgcttggcgtggaggacagccgaggtaccaaacaatgtcagtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 agttcagaacgtcctcacgcttggcgtggaggacagccgaggtaccaaacaatgtcagtg 296
Query: 541 cacatcagctggcagaaaggcagctcagcccttggctcccacagccagtagagaagccct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 cacatcagctggcagaaaggcagctcagcccttggctcccacagccagtagagaagccct 236
Query: 601 aaagtaatttaggctgaactaggtcatcgagtg 633
|||||||||||||||||||||||||||||||||
Sbjct: 235 aaagtaatttaggctgaactaggtcatcgagtg 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
