BAC Information

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BAC

Clone NameMSMg01-158F16
Chromosome1 (Build37)
Map Location 173,368,146 - 173,368,426
singlet/doubletsinglet
Overlap geneF11r
Upstream geneNos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654
Downstream geneRefbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158F16.T7 (MSMg01no158_f16.b1)MSMg01-158F16.TJ (MSMg01no158_f16.g1)
ACCAG358588AG358589
length737787
length of high quality
(start - end)
313 (45 - 357)281 (75 - 355)
definitionCHROMAT_FILE: MSMg01no158_f16.b1 PHD_FILE: MSMg01no158_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:52 2005CHROMAT_FILE: MSMg01no158_f16.g1 PHD_FILE: MSMg01no158_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCAAATGACAAAGTGCTTTTTATCTTGAAATTATAGGTAGTAAAA
ATTCTTTGATTGGTCTAAATCCATAATATTTGTGTAGCTGCTTCATTTGG
TTTCTGACTGGTCTTAAAGGTATAAATATGCTCTGCATGTCTTGGTCATA
GAGTATTGGCTTATAAGTTATTGGGTATGATTAAAAAGGTGTAACATTGG
TAACAAGAAAGTTAGCTTAAAACTGGTAACTCATGGTTGTAGTCATTTTA
AACAGCACGAGGCATCAACCAGACCAGGAAACTAGGGTTCTAAGGATACT
TCTAATCTTTTTTAATCCCCCCCCGCCCTCTTATCCTAGGAACTAGACTT
ATAAGAGACCCCCCCTACAACAAAGACACTTTAATGAAGCATTAAAAATT
GTACTGTTGGGGGCTGGCGAAATGGCTCAATGATTAAGAGCACTGACTGC
TCTTCCAAATGTCCTCTCTTCAAATCCCAGCAACCACATGGTGGCTCACA
ACCACTCGTAATGAGATCTGGCGCGTACTCTTCAGAGTCAGCTGCAGTGT
ACTTACGTATAAGGAAAAATAAATCTTTTAAAAAAAAGTTGCGGTATGTC
GAGATGGCTCAGTGGTATAGAGTACCCGACTGCTCTTTCGATGCCCCGAG
TCCATATCCAAAAATCCAATGTGTTTCACCCCCTCTG
ATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTCTTCTTCAGACGCCGAACCTCG
GCATTAATCCCAGAAGGTCTACTACTTAACAAGAGGAAGAAACCCTTCTA
CAAAAGCCAGGAAAAGAAATCTTCCCTACCCAGCCCACCCCCCTCCTCAT
TACATTTCCTTCTAGGGCACTTGAGCCAAGGGAGTCCGGGTGAGAGGCTC
AAGGTTTCTCTGAGATCTCCGAGAATGTCGGAAGGGCAGGATAGACCTTC
CCAGACGTATACTATGGAGAAGAACGGCTAGCGAAATAGTTGGGTTTGGG
GAGGGTCTTTGGGTCGCCCCGCCCCACCCAGAACCATGGACCCTCCCGGG
TTATTTTTGCCCCCCCCCCCAAAAAGAATACTCCCGGCACCGAGTGGGAG
GTAGGGCCACAGATCACCGGCTTGGGCGAAGGTAGCCAGCCAGACTCCCG
GTGGTGGAGGGTAACGGATAGTGCCTTTCCCCGGGGGATTTTTGTTTTTT
TCCCGCCCAGCCATTTTGTTATGGATTATGGTAACATCCCATCACCGTTT
TTGTGTGGAGTTTCTGAACTGTTTATCTAACCGCCACCGCCTTTTTACCC
CCTCGCTTTTTATATTTCTCCGATGACACTCAATTACTTACAGCTATCGC
CTCCACCAACACCACTCTTTATTTCTTCATTCTTCCCTCCTTTAGACATC
GCTCCAGTGGTGTTGTTTTTATCTTACCACTTATTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_f16.g1 MSMg01no158_f16.g1 CHROMAT_FILE:
MSMg01no158_f16.g1 PHD_FILE: MSMg01no158_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:52 2005
         (281 letters)



>mm_chr1_173367946_173368626
          Length = 681

 Score =  543 bits (281), Expect = e-159
 Identities = 281/281 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttcttcttcagacgccgaacctcggcattaatcccagaaggtctactacttaacaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atttcttcttcagacgccgaacctcggcattaatcccagaaggtctactacttaacaaga 422

                                                                       
Query: 61  ggaagaaacccttctacaaaagccaggaaaagaaatcttccctacccagcccacccccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggaagaaacccttctacaaaagccaggaaaagaaatcttccctacccagcccacccccct 362

                                                                       
Query: 121 cctcattacatttccttctagggcacttgagccaagggagtccgggtgagaggctcaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cctcattacatttccttctagggcacttgagccaagggagtccgggtgagaggctcaagg 302

                                                                       
Query: 181 tttctctgagatctccgagaatgtcggaagggcaggatagaccttcccagacgtatacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttctctgagatctccgagaatgtcggaagggcaggatagaccttcccagacgtatacta 242

                                                    
Query: 241 tggagaagaacggctagcgaaatagttgggtttggggaggg 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tggagaagaacggctagcgaaatagttgggtttggggaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)