BAC Information

Click to search

BAC

Clone NameMSMg01-158I15
Chromosome1 (Build37)
Map Location 102,092,532 - 102,092,757
singlet/doubletsinglet
Overlap geneC230078M14Rik
Upstream geneLOC633295
Downstream geneEG666200
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158I15.T7 (MSMg01no158_i15.b1)MSMg01-158I15.TJ (MSMg01no158_i15.g1)
ACCAG358727AG358728
length706701
length of high quality
(start - end)
233 (122 - 354)538 (63 - 600)
definitionCHROMAT_FILE: MSMg01no158_i15.b1 PHD_FILE: MSMg01no158_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:04 2005CHROMAT_FILE: MSMg01no158_i15.g1 PHD_FILE: MSMg01no158_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAA
CAATTTCTTCAATAGTCATCAAAAGGCAAGCTGATTAATATAAGCAGTTT
AATGAGGCTCTTACACCAAAAATTAGCTATGTTACCTTCATTTACCTGTT
GCTTTACTGAACCACCCACTGTGTTGATCTTGGTTAGGTCAGACAGCTTT
TTCACAGAAGCTTTTTAAACCCATTTCTATCTAGACAGTCTACTAATTAT
CATAATCTCATTGGATTCTCACAGTTGGGTCTTCAAGATAATTGAAACAT
GTTCTGATTAAAGCAGATGCTGACATTAAAGAATTAAGTGAATAAAAACT
GACCATGTCACACATCAGCCTCCTGTATTTTCCAGGGTCTGATTCACAGC
AGAGAGCCACCTCCCTGGTGGATTGTTTCTGGGAAAATCCTCAAATGATG
GACATGTGGTAGTGGTCAAATGAGCCTTTAAGCTCATCTGTGATGCTAAA
AAGGACTGTCAGTAAGAATGTTGTGTCTCACGGAGGAGCTCANATGTTGA
CTACATACACTCCCTTCACTGGAAGCTGATAACCACTGAGCAGCATTCCC
TTCCAATGAATACTNAAAGGTTTGTACTACCAAGGATTTTTCAAAGCCAC
TTCTGCAAAGCAGAGAACATTCAGGATCAGAACTTATCAGCATGGTTCGC
TCCAGN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGGCCATCTAGGTTGGGCTGACCTTATTGAAGTCTCAA
GTGACCCAGAGGAGAGATGGCTCAGTTAGAAAAATACTTGCCCGGCGGTG
GTGGCACATGCCTTTAATCCCAGCATTTTGGAGGCAGAGGCAGGCAGATT
TCTGAGTTCAAGGCCAGCCTGTTCTACAGAGTGAGATCCAGGACAGCCAG
GGCTGCACAGAGAAACCCTGCCTCGAAAAAACGAAAAAATAAAATAAAAT
AAAATAAAATAAAATAAAAATAAAAAAAACACTTGCCTTGAAAAACGATG
ATCTGAATCCCACCCTCAGAACATTGTAATAGTTGGATTCTGTTGCTGTC
GTTACCACCAAATACCATTGGAGAGGAAAGGGTTTATTTCCTCTCATTCT
TCCAGGCAGCTGCCAATCACTGATAGAGTCAATGTGAGCAACTCAAACAG
AATCTATGGATGATACTGCTTACTGGCTTGTTTCTCATGGCTTGACTGTC
TTCTTCATTAGCACAGGACCAGTTCCTTACAGGCGGTACCCTTCATAGTG
GGTTGGCACTTAGCAAAACATTCAATACTTAAGAAAATTCTCCAAGGACT
TAATATAGGCCAATCTGATGGAGGTATTTTCTCAGTTAAGTATCCCTCTT
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_i15.b1 MSMg01no158_i15.b1 CHROMAT_FILE:
MSMg01no158_i15.b1 PHD_FILE: MSMg01no158_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:04 2005
         (233 letters)



>mm_chr1_102092332_102092963
          Length = 632

 Score =  377 bits (195), Expect = e-109
 Identities = 219/227 (96%), Gaps = 1/227 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attagctatgttaccttcatttacctgttgctttactgaaccacccactgtgttgatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 426 attagctatgttaccttcatttacctgttgctttactgaaccaccaactgtgttgatctt 367

                                                                       
Query: 61  ggttaggtcagacagctttttcacagaagctttttaaacccatttctatctagacagtct 120
           |||||| |||||||||||||||||||||| |||||||||||||||||||||  |||||||
Sbjct: 366 ggttagctcagacagctttttcacagaag-tttttaaacccatttctatctctacagtct 308

                                                                       
Query: 121 actaattatcataatctcattggattctcacagttgggtcttcaagataattgaaacatg 180
           |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct: 307 actaattatcataatctcattggactctcacagttgggttttcaagataattgaaacgtg 248

                                                          
Query: 181 ttctgattaaagcagatgctgacattaaagaattaagtgaataaaaa 227
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ttctgattaaagcagatgctgacattaaagaattaagtgaataaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 632
Length adjustment: 9
Effective length of query: 224
Effective length of database: 623
Effective search space:   139552
Effective search space used:   139552
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)