XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGCA
TGTTAGGCTTTTATTTTATTTATTCAGAATGTTTTGCCCTAAATGGCATT
TTCCTTCAATGAAAAGCCTAAATTCCATCACTCATGAAGCTGAAGCTGAG
GCAGAAGCTGGGCACATTCATGCCAGTCTGAGCTAAATAGGGAACGCTGT
CTGAAGAATAAATAAGCAAAGAAGCATAAAGTCATCCTGCAATATTGTGT
GTTTCTTAAGTGAAAGCATGCCACTGTGTGGAAGCCGTTCCGTTTCTTGA
ATGCTGATGCAGTAATGAAGCCATAATGAAGCTAATCCGTGGTAAGAGGC
TGCTGCTTAAGTATCTACCTAGGCTGGGAAGCTCTTCAGCTACAGTCTTA
TGTCCTTGCTCGCNCTTACTAATATTTCTAGAGTCTTGTATTTTCAGATA
GACGGTCCAATCCCCTGAAGACAGGGACAGTATCAAAATACTTTCATGGC
TGGTGTATCTTTCTGTATAGTGCTAAGTAAAATGTGCTTTTCAATGAGAG
TGTGTTGGATTAGTGACCTATTGCCTGCCAGATATAACGAATCCAGTGAC
ATTTCCAAGTTACCAAGGCTTTCATGTTAATCTACAAGTATTTAAAGCAT
CTAGTTTGATTTATAAAGATGAGCCTTTCCCCAAGTGTGATCATCCCTA

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACAGAGACACCCTGTCT
CAAACAAACAAACAAAAAACAAACACAAAACAAACAAACAAACAAAACAC
CATGCTCAGAACACACTCAAGCACTTCCATAAGACAAAAGAATAAGAGAG
AAAAATAACGGACATATAAGTCATTGGCCACAAATAGTCTCTTAACTTCT
CAGAGCAGTGGGATTGAGGACTGTAGGAGAGTGTGAAAGTGTGTGAGGAA
TTGGAAACGGTGGAAGCAGCATTTTGGAGACATGAGTGTACCATCCACAT
GATAGGTTGAGCTGGGCAACAACACTGCAGTATTTGGCTGAATGTTATAC
AGCACTTCACAACCGCATTGTGCATGCTATGTGATCAAACATCTGTTATC
ACACTGGGAGGAATCCTGGATCAGAACCCTTTTAATCATACCACGAATAT
AAAGATAGGCTCCACGCAGAAACCGCCTACCTGCACCTATTGGATTATCA
ATGGTTAGGGAATTAAACTGTTTCTGTTCCCTTCAGCTACTTCTTGCTTG
AAACATTAGAGGCCACGGGCTAAACAAAATAGCCCTGGGTTCCCATCTGG
TCTCTGTGTAGCATGTGGAGCCCTTCTAGCTTTTGAGGGATTTTTAGG

Query= MSMg01no158_i21.b1 MSMg01no158_i21.b1 CHROMAT_FILE:
MSMg01no158_i21.b1 PHD_FILE: MSMg01no158_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:05 2005
         (598 letters)



>mm_chr1_25850508_25851505
          Length = 998

 Score = 1073 bits (555), Expect = 0.0
 Identities = 584/594 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcatgttaggcttttattttatttattcagaatgttttgccctaaatggcatt 64
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 798 gaattcagcatgttaggcttttattttatttattcagaatgttttaccctaaatggcatt 739

                                                                       
Query: 65  ttccttcaatgaaaagcctaaattccatcactcatgaagctgaagctgaggcagaagctg 124
           ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 738 ttccttcaatgaaaagggtaaattccatcactcatgaagctgaagctgaggcagaagcgg 679

                                                                       
Query: 125 ggcacattcatgccagtctgagctaaatagggaacgctgtctgaagaataaataagcaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ggcacattcatgccagtctgagctaaatagggaacgctgtctgaagaataaataagcaaa 619

                                                                       
Query: 185 gaagcataaagtcatcctgcaatattgtgtgtttcttaagtgaaagcatgccactgtgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gaagcataaagtcatcctgcaatattgtgtgtttcttaagtgaaagcatgccactgtgtg 559

                                                                       
Query: 245 gaagccgttccgtttcttgaatgctgatgcagtaatgaagccataatgaagctaatccgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gaagccgttccgtttcttgaatgctgatgcagtaatgaagccataatgaagctaatccgt 499

                                                                       
Query: 305 ggtaagaggctgctgcttaagtatctacctaggctgggaagctcttcagctacagtctta 364
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ggtaagaggctgccgcttaagtatctacctaggctgggaagctcttcagctacagtctta 439

                                                                       
Query: 365 tgtccttgctcgcncttactaatatttctagagtcttgtattttcagatagacggtccaa 424
           |||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgtccttgcttgggcttactaatatttctagagtcttgtattttcagatagacggtccaa 379

                                                                       
Query: 425 tcccctgaagacagggacagtatcaaaatactttcatggctggtgtatctttctgtatag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 378 tcccctgaagacagggacagtatcaaaatactttcatggctggtgtatctttcggtatag 319

                                                                       
Query: 485 tgctaagtaaaatgtgcttttcaatgagagtgtgttggattagtgacctattgcctgcca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgctaagtaaaatgtgcttttcaatgagagtgtgttggattagtgacctattgcctgcca 259

                                                                 
Query: 545 gatataacgaatccagtgacatttccaagttaccaaggctttcatgttaatcta 598
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gatataacgaatcctgtgacatttccaagttaccaaggctttcatgttaatcta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no158_i21.g1 MSMg01no158_i21.g1 CHROMAT_FILE:
MSMg01no158_i21.g1 PHD_FILE: MSMg01no158_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:05 2005
         (588 letters)



>mm_chr1_25772259_25773246
          Length = 988

 Score = 1013 bits (524), Expect = 0.0
 Identities = 572/588 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccagggctacacagagacaccctgtctcaaacaaacaaacaaaaaacaaaca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 caggacagccagggctacacagagacaccctgtctcaaacaaacaaacaaaaaacaaaaa 260

                                                                       
Query: 61  caaaacaaacaaacaaacaaaacaccatgctcagaacacactcaagcacttccataagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaacaaacaaacaaacaaaacaccatgctcagaacacactcaagcacttccataagac 320

                                                                       
Query: 121 aaaagaataagagagaaaaataacggacatataagtcattggccacaaatagtctcttaa 180
           ||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 321 aaaagaacaagagagaaaaataacggacatataggtcattcgccacaaatagtctcttaa 380

                                                                       
Query: 181 cttctcagagcagtgggattgaggactgtaggagagtgtgaaagtgtgtgaggaattgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttctcagagcagtgggattgaggactgtaggagagtgtgaaagtgtgtgaggaattgga 440

                                                                       
Query: 241 aacggtggaagcagcattttggagacatgagtgtaccatccacatgataggttgagctgg 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaccgtggaagcagcattttggagacatgagtgtaccatccacatgataggttgagctgg 500

                                                                       
Query: 301 gcaacaacactgcagtatttggctgaatgttatacagcacttcacaaccgcattgtgcat 360
           ||||||||||||||||||||||||||||||||||||||| |||||||  | || |||| |
Sbjct: 501 gcaacaacactgcagtatttggctgaatgttatacagcatttcacaagtggatcgtgcgt 560

                                                                       
Query: 361 gctatgtgatcaaacatctgttatcacactgggaggaatcctggatcagaacccttttaa 420
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctatgtgatcaaatgtctgttatcacactgggaggaatcctggatcagaacccttttaa 620

                                                                       
Query: 421 tcataccacgaatataaagataggctccacgcagaaaccgcctacctgcacctattggat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcataccacgaatataaagataggctccacgcagaaaccgcctacctgcacctattggat 680

                                                                       
Query: 481 tatcaatggttagggaattaaactgtttctgttcccttcagctacttcttgcttgaaaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatcaatggttagggaattaaactgtttctgttcccttcagctacttcttgcttgaaaca 740

                                                           
Query: 541 ttagaggccacgggctaaacaaaatagccctgggttcccatctggtct 588
           ||||||||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct: 741 ttagaggccacaggctacacaaaatagccctggtttcccatctggtct 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)