NTTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTTTGTAGACCAGGCTGGCCTCAAACTCACAGAGATCCA
CCTATCTCTGCCTACTAATACTTGACCTACAGACCTGACCCGCCATACCC
AACTTATTATTTATGAGCTCCATAAACCTATTCTTTACACATAAATTTCA
TCTTATGACTCATAAAGTTTTATTGAAGAATTAACACAGGGTTAATTTCA
GAAAAATGTTTCAGTGGGTAAAAGTCGACATTGGGGTTCTGAAACCTTGA
TGGAAGAGTATGAGCTACAGATAATCTTTTCGCTCAGAACCTGTGTAGGA
GACACTTCAGGATGTAATGACCGCCCCGAAACACACCTGGGTGCAAAAAC
CCATTTCCTATTTTGCCCCCCCATCAAGAGCCTTCATCCTTGTCACCTTC
CAGAATGGGAGGGACAAAGAAAAACCTTACAGTTTCTGTCAGGCCCATGT
CTCACAAAGGCCTTTTCCCACTGCACTGAAGGAAAATTGCAGCTTAGTAA
CAAGACCAATATTTAAGGCATCCTTGGTCATCTTAGAATATACTAGTTAG
GATATCTCATATACAAAGTACAGTATTAACACATTATGGAACAGATAAAG
CCAATCAATGAGTCCTAGGTGGCCTCTGGACTCAGTACCAGTTTCTTAGC
TAATCTGTTGTCGGC

NTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGAAGACCACTGCCACC
CTGCCTGCCTTGAGGCTGTGCCTGTCTGAGGTTCATCCATCGCATCTGTG
CCAAACAGTAGGCCCTCTCCAAGCTTACTTGCCTACCGCAGTTCTTTCTG
CATGGCATCTGCCACAGAGCCTTCGTATTCCATTGAATCCTATATATAAA
AAGAAATTTCGTTTACAAAGTTTGGGTGACATTTACCTTTTCACTTCTTT
ATTTATCTTATTGTAAAAAAATGCTTTATATTTCCACTAAAATGCAATCT
GAATTTGAAAATGTATGTCATACCACACGCTTTTATTCTCTGACACATAC
AGGAAAAACTGTATTTAACCCTCCCCATGCAATGTAACCATTTAATGCAA
TAAAAAACCCCACATACATGCAACTTTAATTTAAACAGATTTCTGATATA
GTTCGTACTTAATTTTTCATAACAAATAGTAAAGTAATTGTCATTTTATG
CTTATTGCTATATAAATTTACATTATTTAAAATTATCTTCTAGCCTTTTG
TTTTAATGTTTTCTAAATATTTTAAGATTTATTGATTCATTTTATATATG
TGACTACACTGTCACTATCTTCAGACACACCAGAAGAGGGCATCAGATCC
CAATACAGATGGT

Query= MSMg01no158_p08.b1 MSMg01no158_p08.b1 CHROMAT_FILE:
MSMg01no158_p08.b1 PHD_FILE: MSMg01no158_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:34 2005
         (311 letters)



>mm_chr1_69715737_69716447
          Length = 711

 Score =  509 bits (263), Expect = e-148
 Identities = 296/307 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactttgtagaccaggctggcctcaaactcacagagatccacctatctctgccta 64
           |||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||
Sbjct: 205 gaattcactttgtagaccaggcaggcctcaaactcatagagattcacctatctctgccta 264

                                                                       
Query: 65  ctaatacttgacctacagacctgacccgccatacccaacttattatttatgagctccata 124
           ||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctaatccttgaattacagacctgacccgccatacccaacttattatttatgagctccata 324

                                                                       
Query: 125 aacctattctttacacataaatttcatcttatgactcataaagttttattgaagaattaa 184
           |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 325 aacctactctttacacataaatttcatctcatgactcataaagttttattgaagaattaa 384

                                                                       
Query: 185 cacagggttaatttcagaaaaatgtttcagtgggtaaaagtcgacattggggttctgaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacagggttaatttcagaaaaatgtttcagtgggtaaaagtcgacattggggttctgaaa 444

                                                                       
Query: 245 ccttgatggaagagtatgagctacagataatcttttcgctcagaacctgtgtaggagaca 304
           |||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 445 ccttgatggaagtgtatgagctacagagaatctttttgctcagaacctgtgtaggagaca 504

                  
Query: 305 cttcagg 311
           |||||||
Sbjct: 505 cttcagg 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no158_p08.g1 MSMg01no158_p08.g1 CHROMAT_FILE:
MSMg01no158_p08.g1 PHD_FILE: MSMg01no158_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:35 2005
         (281 letters)



>mm_chr1_69864741_69865421
          Length = 681

 Score =  482 bits (249), Expect = e-140
 Identities = 273/281 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagagaagaccactgccaccctgcctgccttgaggctgtgcctgtctgaggttcatccat 60
           ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 615 cagagaagaccactgtcaccctgcctgccttgtggctgtgcctgtctgaggttcatccat 556

                                                                       
Query: 61  cgcatctgtgccaaacagtaggccctctccaagcttacttgcctaccgcagttctttctg 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 555 cgcatctgtgccaaacagtaggccctctccaagcttacttgcttaccgcagttctttctg 496

                                                                       
Query: 121 catggcatctgccacagagccttcgtattccattgaatcctatatataaaaagaaatttc 180
           ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| 
Sbjct: 495 catggcatctgccacagagccttcgtattccatagaatcctatatatacaaagaaatttg 436

                                                                       
Query: 181 gtttacaaagtttgggtgacatttaccttttcacttctttatttatcttattgtaaaaaa 240
           || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gtctacaaagttagggtgacatttaccttttcacttctttatttatcttattgtaaaaaa 376

                                                    
Query: 241 atgctttatatttccactaaaatgcaatctgaatttgaaaa 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atgctttatatttccactaaaatgcaatctgaatttgaaaa 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)