BAC Information

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BAC

Clone NameMSMg01-158P11
Chromosome1 (Build37)
Map Location 8,772,333 - 8,772,644
singlet/doubletsinglet
Overlap geneSntg1
Upstream genenone
Downstream geneLOC100039474, LOC620444, EG665007, LOC665103, LOC100039464, EG620853, LOC665138, Rrs1, Adhfe1, LOC620542, 3110035E14Rik, Mybl1, Vcpip1, LOC100039536, LOC665173
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158P11.T7 (MSMg01no158_p11.b1)MSMg01-158P11.TJ (MSMg01no158_p11.g1)
ACCAG359032AG359033
length730742
length of high quality
(start - end)
316 (46 - 361)667 (76 - 742)
definitionCHROMAT_FILE: MSMg01no158_p11.b1 PHD_FILE: MSMg01no158_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:35 2005CHROMAT_FILE: MSMg01no158_p11.g1 PHD_FILE: MSMg01no158_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACTTTATCTACTGAGTCCTGGCTGTTGTATAACAGTGAGTGAT
AGCTGCATTTTCTTATCATGAAAGAGTAAAGGTCTTATTAAGATAGTACA
CTTTCAGGAGTGGTATTGAAAGTGATGGTAGAAATTATCTCCCAATGTCT
TTGAAGAAAGAGAACCAAATTCACTAAATTCAGTGTGAATTATTTTCCTC
TGAGACTGTGTCTAAATGGATCTGTAGATATTCATGAGAGAATTATATAA
GAATAGTTAAAAGAACACTTATTATTCTAACAGATGTGTGATGGTCTACT
GAATCTAGCCTTTTTGGGGGAACAACAGACTCAAAAAACAAAATCTTGTT
TTATAAAACCAGTTGGACCCCACCTTACAAGAATTTCACACTATGAAAGG
CATCCTTAGATGAGATTTTATTTTATTAGATAAAACATTAGTTATAAACA
GTGCAAGTTCTACAATCTACCATTCATTATATTCCATTACTGACGACACC
ATATCCACCTCATTGAAATATATCCACTCAAGGAGGAAATCTATAGAAAG
CATGCAGCTTTCTATAGATTTCTTCTCAGCCTGGAGATTTAATTTATGCT
TCGCTGATAGACTTCCCCTGCAAAGTCATGACGGCGGTGAACCGTGCCTG
ATTTACCAGCCCCCATATCTTTCTCTCCCN
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTAGAGAAATAAAAATTATGGTAG
AGAAGTAAAGATAAAATGATGATAGAACTTAAATTCTTACAAATAAAATA
AATCAAATAGAAGATAGACTATTAGAACTTAAAGACAAGAGAAATCAGAA
CACACATGCAAAAGTTTGAAAAAATTTAAAACACAAACACATTAAAGGAA
TCAGACACCATGGAAAGAAGAAATGTGCAAATTCTAGAAAAAGATGAGAG
AGTGATAGAATTCAATAACATAGATTATATCTTCAACAAAATAATGGAGA
AAAACTTTTACAAACTATGTTAAGGCATAACCAAACATACACAAGGAGCA
CATAATGACAGGGATAGAAAAAAATTTCATGGCATATCATGGTTAAAACA
ATGAATAGAACAAGAAAAACAGCCAGAGAGAAAAATAAAATAAAACAAAA
CATGCCACATATAAAGAAAACCCCAACAGAGCAGCTGAGATATTAATGGA
AACACTAAAAACAGAAGAGCCTGGAGCAATGAACTCCAATGCTCTAAAAC
AGACTGGCTGATATGGATTACCATATCCAACAAAAATACACACCTTAGTT
GAAGGTAAAAAAATCATTCATGACACAAAGTTGCTAAAAGAGTTACAGAC
AACCACACCAGTACCAAAAAGAATAATGAAAGCAATATTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_p11.b1 MSMg01no158_p11.b1 CHROMAT_FILE:
MSMg01no158_p11.b1 PHD_FILE: MSMg01no158_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:35 2005
         (316 letters)



>mm_chr1_8772129_8772844
          Length = 716

 Score =  588 bits (304), Expect = e-172
 Identities = 310/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcactttatctactgagtcctggctgttgtataacagtgagtgatagctgcatt 64
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 516 gaattctcactttatctactgagtcctggctgtcgtataacagtgagtgatagctgcatt 457

                                                                       
Query: 65  ttcttatcatgaaagagtaaaggtcttattaagatagtacactttcaggagtggtattga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ttcttatcatgaaagagtaaaggtcttattaagatagtacactttcaggagtggtattga 397

                                                                       
Query: 125 aagtgatggtagaaattatctcccaatgtctttgaagaaagagaaccaaattcactaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aagtgatggtagaaattatctcccaatgtctttgaagaaagagaaccaaattcactaaat 337

                                                                       
Query: 185 tcagtgtgaattattttcctctgagactgtgtctaaatggatctgtagatattcatgaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tcagtgtgaattattttcctctgagactgtgtctaaatggatctgtagatattcatgaga 277

                                                                       
Query: 245 gaattatataagaatagttaaaagaacacttattattctaacagatgtgtgatggtctac 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 276 gaattatataagaatagttaaaagaacacttattgttctaacagatgtgtgatggtctac 217

                       
Query: 305 tgaatctagcct 316
           ||||||||||||
Sbjct: 216 tgaatctagcct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)