BAC Information

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BAC

Clone NameMSMg01-159A10
Chromosome1 (Build37)
Map Location 67,151,321 - 67,151,637
singlet/doubletsinglet
Overlap genenone
Upstream geneMtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1
Downstream geneCps1, Kif22-ps, Erbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159A10.T7 (MSMg01no159_a10.b1)MSMg01-159A10.TJ (MSMg01no159_a10.g1)
ACCAG359076AG359077
length749745
length of high quality
(start - end)
322 (44 - 365)295 (73 - 367)
definitionCHROMAT_FILE: MSMg01no159_a10.b1 PHD_FILE: MSMg01no159_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:39 2005CHROMAT_FILE: MSMg01no159_a10.g1 PHD_FILE: MSMg01no159_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATATGACATCAGAATGTACATGAATATGGCTTTCTCCAGCTATTTTC
AAAAACAAGTGTGCAGCCTAGCAGGTGGCATATTACTCACCGAGAGTTCA
AGCATTACCTAGCAATATAGGAAGAAATGGGGTGTGAAATATGAGACTCT
AGAAAGAAATAACTACAATAGTAGACCCTAAATTCTAAGACAAATGAAAA
GATTGCTCAAAAGTGAGGAGATGTCTCAGTCAGTGGTGGCACATACCTTT
AATCCCAGCACCCTAGAGGCAGGGGAATCTCTGAGTTCGAGGACAGACAA
GTAAGTCTCCAGAGTATGTTCTGGCACACCCCCCGCTACACAGAGAATCC
CTGACACATGCATGTGCACCCATGTACCTACGTGTACACACCACACACAC
ACACACACACACACACACACACACACAAAAATCACAGCTCTAAAAACTAC
TGAGGCAGATTCTGAAAGATCCATACAGTAAATATATGAATTCAAAAAAT
AGGAAAAAAGATGAGAAAACTAAGACATTTGGATTTTAAAGGTGGCTCTG
TTTCTGATAAAGATCATCTGGGAGTTGGGGGGGGCATAATTAAGCTGTTA
CGCTGACAATCTTTTTTCATTTCACACAATTCTACCTCTCTGTGGTCAAC
CAACACAGTCCAAATACTATGAATCCTGTTTATAAGGCATAACCACCAT
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCAGTCCAGAGGTTGCCCTTTCCCCAG
AGACTCTTCTGTATATAATTCAGGCATTTTGGTTATCCACTCCTCTTTTG
CTCCTTTTGTATCTTTGGCCTCCTGGCTGCTGTTCTTGGTTCTTCCCTCT
CACTTCCCTTCCCCCTTCCCTCACAAGGTTCAGGGTCATGACCATTATGG
AATCTCATGGATGTATCTGCCTCTGGCTATGCTCTCCATATATTTGTAAT
AAATTTTCTCCCTAACCATAACCTGGGAAGTCTTTTTGTTTCCTTCCTCT
TTCTTTCTTTCTTTCTTTTTTTCCCCCTCCCCCCCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTCCCCCCTTTCTTTCATAAATTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTTTCTCCTCTCCTCTCCTCTCCTCTCTT
TTCCTCTCCTCCCCTCCCCTCCTTCCTCCTCCTCATCCTCCTCTCCTCTT
CCTCTTCCTTCTTCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTC
TCTCTCTCTCTCCATTTTTTTATATTTTTGAATCATCGCGCTTGATTTGA
AAAAATATAATGTTAAAATCCTCCTTTTTTTTTTTATAATTCCACCTCCT
CCACCCCAAATATATTCTCTTATCCATCTAATCACTCTTATCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_a10.b1 MSMg01no159_a10.b1 CHROMAT_FILE:
MSMg01no159_a10.b1 PHD_FILE: MSMg01no159_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:39 2005
         (322 letters)



>mm_chr1_67151205_67151926
          Length = 722

 Score =  613 bits (317), Expect = e-180
 Identities = 317/317 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatatgacatcagaatgtacatgaatatggctttctccagctattttcaaaaaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gaattcatatgacatcagaatgtacatgaatatggctttctccagctattttcaaaaaca 374

                                                                       
Query: 65  agtgtgcagcctagcaggtggcatattactcaccgagagttcaagcattacctagcaata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 agtgtgcagcctagcaggtggcatattactcaccgagagttcaagcattacctagcaata 314

                                                                       
Query: 125 taggaagaaatggggtgtgaaatatgagactctagaaagaaataactacaatagtagacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 taggaagaaatggggtgtgaaatatgagactctagaaagaaataactacaatagtagacc 254

                                                                       
Query: 185 ctaaattctaagacaaatgaaaagattgctcaaaagtgaggagatgtctcagtcagtggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ctaaattctaagacaaatgaaaagattgctcaaaagtgaggagatgtctcagtcagtggt 194

                                                                       
Query: 245 ggcacatacctttaatcccagcaccctagaggcaggggaatctctgagttcgaggacaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggcacatacctttaatcccagcaccctagaggcaggggaatctctgagttcgaggacaga 134

                            
Query: 305 caagtaagtctccagag 321
           |||||||||||||||||
Sbjct: 133 caagtaagtctccagag 117


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)