Query= MSMg01no159_a13.b1 MSMg01no159_a13.b1 CHROMAT_FILE:
MSMg01no159_a13.b1 PHD_FILE: MSMg01no159_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:40 2005
(324 letters)
>mm_chr1_125130280_125131003
Length = 724
Score = 545 bits (282), Expect = e-159
Identities = 306/320 (95%), Gaps = 10/320 (3%)
Strand = Plus / Minus
Query: 5 gaattcagtttgccagacttgagagcaagtacctttactttctgagacttcggtctatcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gaattcagtttgccagacttgagagcaagtacctttactttctgagacttcggtctatcc 571
Query: 65 atgagatggacacacacacacacacacacacacacacacacacacacacacacacattta 124
||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 atgagatgg----------acacacacacacacacacacacacacacacacacacattta 521
Query: 125 gtttgtatgatactactatgccaatttatatattagatttgaactaaaacttgagtttgg 184
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 520 gtttgtatgatactactatgccaatttatatattagatttgaacgaaaacttgcgtttgg 461
Query: 185 tcttcatagagctcattgaactaatcttgcatagacaccagaggtagattaggagaacat 244
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 460 tcttcatagagctcattgaactaatcttgcatagacacgagaggtagattaggagaacat 401
Query: 245 gtctgtcctctgtggctatagagagaaaactgtcagaatcttgagcagcagagagatcct 304
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 400 gtctgtcctctgtggctatagagagaaaactgtcagaatcttgagcatcagagagatcct 341
Query: 305 gggaatttgatcatcaacat 324
||||||||||||||||||||
Sbjct: 340 gggaatttgatcatcaacat 321
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 15
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space: 225225
Effective search space used: 225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no159_a13.g1 MSMg01no159_a13.g1 CHROMAT_FILE:
MSMg01no159_a13.g1 PHD_FILE: MSMg01no159_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:40 2005
(555 letters)
>mm_chr1_125057739_125058693
Length = 955
Score = 1027 bits (531), Expect = 0.0
Identities = 549/555 (98%)
Strand = Plus / Plus
Query: 1 taagtttacgattttgaacatttgctactccttcagagaatagagtttagttcccagaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagtttacgattttgaacatttgctactccttcagagaatagagtttagttcccagaac 260
Query: 61 acactgctctttcaaaggatcagcattcaattcccagcattcatgtagggcagctcacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acactgctctttcaaaggatcagcattcaattcccagcattcatgtagggcagctcacaa 320
Query: 121 atgtctttaaatccagctcctggaatttgacaactttttctagcattcaagagcaccttc 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtctttaaatccagctcctgaaatttgacaactttttctagcattcaagagcaccttc 380
Query: 181 atatacacatgccacacaccaaaaaataaaataaagttataaaatcatgaccatcaccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatacacatgccacacaccaaaaaataaaataaagttataaaatcatgaccatcaccat 440
Query: 241 catcatcatcaccagaaccactgataaaagaaaaaacataaacagccacacaattactaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catcatcatcaccagaaccactgataaaagaaaaaacataaacagccacacaattactaa 500
Query: 301 gctaacgaaagactagtttgtgggctatccagtgagtattcagcactgcaaaaaatactg 360
||||| ||||||||||||||||||||||||||| ||||||||| | ||||||||||||||
Sbjct: 501 gctaaggaaagactagtttgtgggctatccagtcagtattcagtattgcaaaaaatactg 560
Query: 361 atagctattaatagtgatatagagttttgattccagtacccaggggcctgaggcaagaaa 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 atagctattaatagtgatatagaattttgattccagtacccaggggcctgaggcaagaaa 620
Query: 421 acttcaaatttgaggctggcctggttataaagcaagtccaaagccagctttggctgtaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acttcaaatttgaggctggcctggttataaagcaagtccaaagccagctttggctgtaaa 680
Query: 481 gccaatctcttagataaacaaaaatatctagttgaattaaaagtgtctctagctgcatat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gccaatctcttagataaacaaaaatatctagttgaattaaaagtgtctctagctgcatat 740
Query: 541 gtagcagaagatggc 555
|||||||||||||||
Sbjct: 741 gtagcagaagatggc 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
