BAC Information

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BAC

Clone NameMSMg01-159B20
Chromosome1 (Build37)
Map Location 118,502,846 - 118,503,135
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap5a
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159B20.T7 (MSMg01no159_b20.b1)MSMg01-159B20.TJ (MSMg01no159_b20.g1)
ACCAG359143AG359144
length743741
length of high quality
(start - end)
683 (42 - 724)290 (72 - 361)
definitionCHROMAT_FILE: MSMg01no159_b20.b1 PHD_FILE: MSMg01no159_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:46 2005CHROMAT_FILE: MSMg01no159_b20.g1 PHD_FILE: MSMg01no159_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCCAGCTCAGTGGCCCAGGAATTATCTTCAACAAAATCATAAAAGAAAAT
ATCCCTAAACTAATGAAAGTTATGGCTTTAAACATGCAAGAAACTCACAC
AACACTAAATAGATTGGATAAGAAAAAGAAGCCTCCTGCCATAGACCACA
TGTACAGCCTCATGCCAAAACACTACATGTACAGGATTAAAAAAATACTA
AAGGTTGCAAGACAAAAGCAACAAGTAACATAGAAAGACAAACTTTTTCA
TAATTCCACCTGACTTCTCAAAACAGAATGTAAAAGACAGAAGGCTCTGG
GCAGATGTCTTAGAGAACATAAGGGACCACAGATGTCAGCCGAGAAACTA
TATGAATCAAAACACTAAATCAGTATCAATGGAGTAGACAGACAAATTCA
CAACACAATAAAATATAAAGTAAATTTTTATATTTTTGTTTGTGAGCCTA
GTCTTTAATGGCTGAGTCTTCTCTCCAGTTCTAAACTATATTTTTAACTT
CTCTGACTCTAAAAAGGATACTAGAGGGATAGCTCCAACAAAAGGAATCA
TAATCAACAACTCTTAATCAATTGAGTCAATGTAACAATAAAAAGACACA
GGCTAGCAGATTGGATGCTTGAATAGCATTCATCATCTTGTTTCATTAAA
AAAAAATTAACTCAAGCAAACAGTTCCAAGAAACAAGCTGATA
ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGAGAGAGAACCTTTCTCAGTAAATACAA
AGGTTGTTTACTGAGGAAGGCACCAACCTTGGACCTCCAAATAAATATCC
TCATAACTCATTGAACACCACACAAACTTACAAGTGTACAGATATTCAAA
CACATACACTTTGTAAAAGAAAAACACTTTGAAAACAGTGTTCATAAAAT
AAAAAGATTATATTTTAATCACAGCAATTTGAATGCAGATGCACACAGAT
ATATGTGAGTTTGAAGACAGCCTGGGTTATACAATGAGATGCTATGAAGA
AAGAGATAGAGAGACTGAAACACACACCGAGAAAGAGACAGAGACTGAGG
CAGAGAGAAACAGAAACAATGAAAGAAAAGGTTAGAGGGGGGAAGAAAGA
AAGTTCAAAATAACTTTAGCTTACTAAATTTATAAAACAAGCAATTGGCT
AGGTTTCCCTTGTCAATGGAGATTTTTTTTTTGACTCAATTAGACAACTC
CTCACTGGATTCTGTCTGATCTTTACAAGTACAGGAACTAAAGATATAAA
GTCTACATGTGCGCTTTACTTCAGGAAGTAAGAACATGAAACCTACAGCT
TAGAAAAGAAGGAAAATTCTAAGACCTGGCTTCCTGAGAGGTGTGGGAGT
CACATAAGATTAAGATCATGCCAGACACAGAGGAAAAGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_b20.g1 MSMg01no159_b20.g1 CHROMAT_FILE:
MSMg01no159_b20.g1 PHD_FILE: MSMg01no159_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:46 2005
         (290 letters)



>mm_chr1_118502646_118503335
          Length = 690

 Score =  532 bits (275), Expect = e-155
 Identities = 287/291 (98%), Gaps = 2/291 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagagagaacctttctcagtaaatacaaaggttgtttactgaggaaggcaccaaccttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagagagaacctttctcagtaaatacaaaggttgtttactgaggaaggcaccaaccttg 260

                                                                       
Query: 61  gacctccaaataaatatcctcataactc-attgaacaccacacaaacttacaagtgtaca 119
           | |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 261 ggcctccaaataaatatcctcataactccat-gaacaccacacaaacttacaagtgtaca 319

                                                                       
Query: 120 gatattcaaacacatacactttgtaaaagaaaaacactttgaaaacagtgttcataaaat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gatattcaaacacatacactttgtaaaagaaaaacactttgaaaacagtgttcataaaat 379

                                                                       
Query: 180 aaaaagattatattttaatcacagcaatttgaatgcagatgcacacagatatatgtgagt 239
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 380 aaaaagattatattttaatcacagcaatttgaatgcagatgcagacagatatatgtgagt 439

                                                              
Query: 240 ttgaagacagcctgggttatacaatgagatgctatgaagaaagagatagag 290
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttgaagacagcctgggttatacaatgagatgctatgaagaaagagatagag 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)