BAC Information

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BAC

Clone NameMSMg01-159C08
Chromosome1 (Build37)
Map Location 13,291,064 - 13,291,381
singlet/doubletsinglet
Overlap geneNcoa2
Upstream geneLOC100039709, LOC621353, LOC100039733, Sulf1, Slco5a1, LOC383490, Prdm14
Downstream geneLOC665341, LOC100039812, EG621685, Tram1, Lactb2, Xkr9, LOC100039843, EG433273, LOC100039859, LOC100039869, Eya1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159C08.T7 (MSMg01no159_c08.b1)MSMg01-159C08.TJ (MSMg01no159_c08.g1)
ACCAG359166AG359167
length746747
length of high quality
(start - end)
323 (41 - 363)292 (73 - 364)
definitionCHROMAT_FILE: MSMg01no159_c08.b1 PHD_FILE: MSMg01no159_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:49 2005CHROMAT_FILE: MSMg01no159_c08.g1 PHD_FILE: MSMg01no159_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTGAGGAAGTAGGGAAAAAGTCCACCCCTGGAAGTTCTCGGAAAAGGTG
GAGCTGTCCAAGGCCCATGTTCTAAGAGACCCTAAGAGAAATGGTGAGGA
AACACCAAGGAAGCCCTGACGGTCTCCCAGTAACAGGGAGGACCTGCACA
CCAACCATGAGCAGTGAGCACACAACTTGCCCAGCCTCCTCCATGTTTGG
CTTACCCTTTACCTGTGCATCATCTTGGCATCCAGCACCTCTGAGGGAAA
AAAAAGATGGTAAAATCCCAACCTTTGAGCAGCATTCCAAAGAAAAGCAC
TCACAAACCAAATTATTTCATGTCCCTCAGCTCGCTGAGAGCACATGCAC
TGAGCATGGGTGAGCATGGTCTTTACTGTACACACTAAACTACTAACTCT
ATTAACAGTTCCACTTAATATCAAAGTCACATGAGAACTGTTGGGAAAGT
GAGCTAATCTAAAGGGTCCGTGTCCAGTTAGCTTGGGTCTGTATGTGAGC
GATTGTAAAGAAAGCTGCCTGGAAGCTGAAACTGTAAGCGAGGGCAAAGT
CATCAGCAGGGTTTACTCCCTGCTCGCATGTCTGTGTGACCCAGGAAAGG
ACTAAAGGAGGAGAAAGCCATGAACACACACAAACCTAAGCCACATGACA
AATGATCTAAACCTAAACCCTAGGAGGCCACTGAACAGTGTGATAC
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGTGGAGGGATCGGGACACCAACCCAG
CCACAAAACCTGTGACCCACAAGTGTCCTGTCTACAAGATGTGCAGGAAT
AAAGATGGAGCAGAAATGGAAAGGCTCATCAATGACTGGCCCAACTTGAG
ACTCATGCCATGAGAGTGCCCATCCCTGACACAGTGATAATCTGCAATAC
CTGGCAAACAGGTGCCTAGCATAACTGCCATCTGAGAGGTTTCACCTCTC
AACTGATAGAAATGGAGCCCCACAGCCAAACAGTAGGCAGAGCTGGGGAA
TCCTGTGAAAGACTTTTTATTAACCCCCCCACCCCCCAGAAAGGTCAAAG
ACACCACAGAAAAACCTACCCAAGCAATAACCATAGGGGCTCACAGAGAC
TGAACTGTCAACCAGAGAGCATGTATGGGACAGAGCCAGGCCCTCTGCAC
ATATGTAATATATGTGGGGTCCTAGCAGCAGGAGCAGGACCTGCCTGTCT
CAGACTACATTGCCTGCCTTGGATCCCTTCCCCTAACTGAGCTGCCACAA
TAGATGTGCCTAGCCCTACTGCAATTGATATTCCAAGGCAAATGATGTCT
TCTTAGGAGAAAAGACAGACCAGGGAATTGGAGGGAAGGAATTTGGGGCG
AGGGCGCGCCAACATTATTTGGACTAAATTACGTTCGCTCCCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_c08.b1 MSMg01no159_c08.b1 CHROMAT_FILE:
MSMg01no159_c08.b1 PHD_FILE: MSMg01no159_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:49 2005
         (323 letters)



>mm_chr1_13290860_13291582
          Length = 723

 Score =  584 bits (302), Expect = e-171
 Identities = 314/318 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgaggaagtagggaaaaagtccacccctggaagttctcggaaaaggtggagc 64
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgaggaagtagggaaagagtccacccctggaagttctcggaaaaggtggagc 264

                                                                       
Query: 65  tgtccaaggcccatgttctaagagaccctaagagaaatggtgaggaaacaccaaggaagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtccaaggcccatgttctaagagaccctaagagaaatggtgaggaaacaccaaggaagc 324

                                                                       
Query: 125 cctgacggtctcccagtaacagggaggacctgcacaccaaccatgagcagtgagcacaca 184
           ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 325 cctgacggtctcccagtaacagggagggcctgcacgccaaccatgagcagtgagcacaca 384

                                                                       
Query: 185 acttgcccagcctcctccatgtttggcttaccctttacctgtgcatcatcttggcatcca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acttgcccagcctcctccatgtttggcttaccctttacctgtgcatcatcttggcatcca 444

                                                                       
Query: 245 gcacctctgagggaaaaaaaagatggtaaaatcccaacctttgagcagcattccaaagaa 304
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcacctctgagggaaagaaaagatggtaaaatcccaacctttgagcagcattccaaagaa 504

                             
Query: 305 aagcactcacaaaccaaa 322
           ||||||||||||||||||
Sbjct: 505 aagcactcacaaaccaaa 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)