BAC Information

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BAC

Clone NameMSMg01-159G04
Chromosome1 (Build37)
Map Location 166,219,663 - 166,219,981
singlet/doubletsinglet
Overlap geneBlzf1
Upstream genePrrx1, LOC100039597, Scyl1bp1, LOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik
Downstream geneNme7, Atp1b1, LOC100040065, Dpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159G04.T7 (MSMg01no159_g04.b1)MSMg01-159G04.TJ (MSMg01no159_g04.g1)
ACCAG359334AG359335
length732736
length of high quality
(start - end)
321 (44 - 364)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no159_g04.b1 PHD_FILE: MSMg01no159_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:06 2005CHROMAT_FILE: MSMg01no159_g04.g1 PHD_FILE: MSMg01no159_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAGTACACAAGTAACCAAAAAATGCAATAAAATTTAAATAACTGAA
TGACTTAGTTCTTTCTCCCAAAGCAGTTCACAAATGGCCAACAGTTACAC
ATATCTGGTTATTAGGAACATGCAAACCAGTTAAGTAACTATGAGACTAC
ATAGAAGTGGGGATTGTTACTGAAACTGTAAAATGGTGTGCACTGAGGGA
AACACTGACAAACTGTGAGTGGTCTGTGCACTGCATTCCGGTCTGAGGCA
TATATCCAAGAGAAAACATACTTAAATAGTTCCTTAAATACGATGTTCAC
AGCATCTGCTCACTATGTCTATCCCGCCCCCCCCGCGCCCAGATGATGAG
CGCATGCACAGACTTTAATACCCTATAAATTATAATAAATTCCATAAAAA
GGAATTAAATGCTGACACATGCTATGCTGTGGATGAGCTTCCAAAGCACC
ATGCGAAGGAGAAGAAGTCACATATAAAAGGCCATGTTTTCAACTCTCTG
AAATGTCTAGAGGAGGCAAATGCATAGACATAGTATCTACTCAGAGAAAG
CATCAGCGCGAGAGGCATTGGAAGTGGCTGGTTCCAGGAGCAATGGGAGA
GTTTTGGAACCACACAGAGAGCTGGGGCTGCGTAATGTCTGAATCAGCTA
ACTGCTGGTGGACTGAAGGTGAGGAAAAATTN
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAGCCAACCAGAACTACACAGTAAT
AAACTTTCTCAAAAAATAATTTCTTTCAAACTTTTCTTTGCATTATATTT
TATATGTATGGATGTTTTACCTTCACATATGTGTAGCCATCACATGATTG
CAGTTCCTGAAAAGGTCAGAGGTGACGTCTGATCACCTAGAACTGGAATT
ACATACAGACAGTTGTGAGCCACCATGTAGGTTCTGGGAAATTAACTCAG
GTCATTTGGAAGAAGATTAAGTGTTCTGAATCAGTGAGCCATCTCTCCAG
TCTCCAGAAAGAATTTTTTTTTTACCCCCCCCCCCACCGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAACACCGAAAGAAAGAAAGAAAGGAAGGACGG
AAGGAAGGAAGGAAGGAAGGAAGGAAGACAGAGAGAGAGAGAGAGAGAGA
GACAGAGAGAGAGCCAGTATAAAACTCCATGCATGTTTCATAAAAATAGA
ATCTATTTGCCACTTCTGTGTCATGATGCTAAAGAATTGAATGACCACAG
AGAGCCCATGTCTGATGTAAATATAATTAAAGTCCCATTCCCTAAAATGC
AGTATCAAACAACAAAACCTGTTATGCATCCTGATTCTGTAATCTGCCCC
GTAACTTTTATGCCACTTATCTTTTACTACACCGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_g04.b1 MSMg01no159_g04.b1 CHROMAT_FILE:
MSMg01no159_g04.b1 PHD_FILE: MSMg01no159_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:06 2005
         (321 letters)



>mm_chr1_166219460_166220182
          Length = 723

 Score =  605 bits (313), Expect = e-178
 Identities = 317/319 (99%), Gaps = 2/319 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcagtacacaagtaaccaaaaaatgcaataaaatttaaataactgaatgactt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ggaattctcagtacacaagtaaccaaaaaatgcaataaaatttaaataactgaatgactt 463

                                                                       
Query: 64  agttctttctcccaaagcagttcacaaatggccaacagttacacatatctggttattagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 agttctttctcccaaagcagttcacaaatggccaacagttacacatatctggttattagg 403

                                                                       
Query: 124 aacatgcaaaccagttaagtaactatgagactacatagaagtggggattgttactgaaac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aacatgcaaaccagttaagtaactatgagactacatagaagtggggattgttactgaaac 343

                                                                       
Query: 184 tgtaaaatggtgtgcactgagggaaacactgacaaac--tgtgagtggtctgtgcactgc 241
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 342 tgtaaaatggtgtgcactgagggaaacactgacaaactgtgtgagtggtctgtgcactgc 283

                                                                       
Query: 242 attccggtctgaggcatatatccaagagaaaacatacttaaatagttccttaaatacgat 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 attccggtctgaggcatatatccaagagaaaacatacttaaatagttccttaaatacgat 223

                              
Query: 302 gttcacagcatctgctcac 320
           |||||||||||||||||||
Sbjct: 222 gttcacagcatctgctcac 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 723
Length adjustment: 9
Effective length of query: 312
Effective length of database: 714
Effective search space:   222768
Effective search space used:   222768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)