BAC Information

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BAC

Clone NameMSMg01-159I16
Chromosome1 (Build37)
Map Location 156,043,643 - 156,173,088
singlet/doubletdoublet
Overlap genenone
Upstream geneLamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
Downstream geneCacna1e, LOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159I16.T7 (MSMg01no159_i16.b1)MSMg01-159I16.TJ (MSMg01no159_i16.g1)
ACCAG359450AG359451
length729732
length of high quality
(start - end)
320 (46 - 365)288 (78 - 365)
definitionCHROMAT_FILE: MSMg01no159_i16.b1 PHD_FILE: MSMg01no159_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:17 2005CHROMAT_FILE: MSMg01no159_i16.g1 PHD_FILE: MSMg01no159_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,043,643 - 156,043,957)(156,172,801 - 156,173,088)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGAGGTCTACAGTTTTTCTTTTTGTGTGTATACTCTTACTAAT
GAGCTTTATTGTCTAGCAGAATAATAATATTTAGACAGTCTTGAACATGT
ATAGGACACTCAATTGGATCCATGAATCTTTTCCAAGGGTGATAAAGGGC
CAGGGCTAATGCATCAAGTGTCCCCAGTATTTGAGAACAGCCAGAGTCCT
GCGCTGGCTGCAGAGTACAGAGAACTTGGGGGGAAGCAATCCTGGCTTCA
AAGCTATAGCTAAAACTCAGGGACCTTGTAAGGCAGTACAATCTAGTCCT
GCATCCAGGCATAATTCCAGCTCACGACTCCAACCAAGAGCCTGCAGCAT
CCTTGAAGGTGGAGAGACCACGCAGCCTCTTTTCCAGCAGTGCCTCTCAG
CTGTGCTCATCCAGCCTGTGGGGCTGACAGGAAGGCCTGAACTCCGCCAC
GGAACCTCTTAGGAGGCCAATGCCCCATCCCATCCCTGTGCTTCAGGCTT
CTCCCTCAATGGCTCCTTTCTTCCCTCTTCCCAGACAAGCAGGTAGGTCC
TTATTTGCACCACTGCCAAGTTGGACAGCTCAGGGGGTCCGAGTGGGGAT
ACCAGATTTTAAAGGAGGCCCTGCAAACATAAATTAAGACAATACACCCC
TTGTTTGCATACATTGAAGCGTTGAATAG
GTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGACAGAATTGACAGATTGAGT
AGTGAGCCAGTTAGGCAAACTGCTGGGCTTTCATCTCAAATCAGAGCCCT
GAGGAAAAGAACAGCTTTTTGCAGCAGGGTTCACCTGGGCAAAATCACAA
AGGACGTGGGTTTGCAGGACTTAGGCTGCAGTTTACCCACATCAGGTCCT
CTGCTAAGGGCTGGAATCCCTCTGCTAAAATATATGGACTCCCCCCAGGG
AACCCAGAAACCTCACTGTTTCTGCCTCTAGTGGGAATTGAGGACCTGGT
ACCATTCATTCAATCTGTGTCCTCCCCCGCCACGTCTGCAAAATGGAGCA
GTATTTGCATAATCAACACCACCTTTCTTAAATATCAGTGGGCTTTGCCC
AGTAATTACATGTGATGGAAGGAGGGCCTAGTGGAGACTGACAGACAGGA
AACACTGGAATCTTAAGATTGAACAGGAAAAAAACGTCCGATACCAGTGA
TTTTGGCCAGATAGAAGGCCAGAGCAGGAAAAAAAAAAATAGTGCCAAGA
TTTGGATTAACAAAGAATACAATGGCGATTCTTCCAATGTATCACTTTTT
GACTATGAAGAATGAATATGTTTTTCTTGAGGTTGCCCCCCAGCCTACAA
AAGTAGCTGTCTTGCTTTGGTATTCCCCAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_i16.b1 MSMg01no159_i16.b1 CHROMAT_FILE:
MSMg01no159_i16.b1 PHD_FILE: MSMg01no159_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:17 2005
         (320 letters)



>mm_chr1_156043439_156044158
          Length = 720

 Score =  609 bits (315), Expect = e-179
 Identities = 315/315 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgaggtctacagtttttctttttgtgtgtatactcttactaatgagctttat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgaggtctacagtttttctttttgtgtgtatactcttactaatgagctttat 264

                                                                       
Query: 65  tgtctagcagaataataatatttagacagtcttgaacatgtataggacactcaattggat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtctagcagaataataatatttagacagtcttgaacatgtataggacactcaattggat 324

                                                                       
Query: 125 ccatgaatcttttccaagggtgataaagggccagggctaatgcatcaagtgtccccagta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccatgaatcttttccaagggtgataaagggccagggctaatgcatcaagtgtccccagta 384

                                                                       
Query: 185 tttgagaacagccagagtcctgcgctggctgcagagtacagagaacttggggggaagcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttgagaacagccagagtcctgcgctggctgcagagtacagagaacttggggggaagcaa 444

                                                                       
Query: 245 tcctggcttcaaagctatagctaaaactcagggaccttgtaaggcagtacaatctagtcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcctggcttcaaagctatagctaaaactcagggaccttgtaaggcagtacaatctagtcc 504

                          
Query: 305 tgcatccaggcataa 319
           |||||||||||||||
Sbjct: 505 tgcatccaggcataa 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no159_i16.g1 MSMg01no159_i16.g1 CHROMAT_FILE:
MSMg01no159_i16.g1 PHD_FILE: MSMg01no159_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:17 2005
         (288 letters)



>mm_chr1_156172601_156173288
          Length = 688

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagacagaattgacagattgagtagtgagccagttaggcaaactgctgggctttcatctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cagacagaattgacagattgagtagtgagccagttaggcaaactgctgggctttcatctc 429

                                                                       
Query: 61  aaatcagagccctgaggaaaagaacagctttttgcagcagggttcacctgggcaaaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aaatcagagccctgaggaaaagaacagctttttgcagcagggttcacctgggcaaaatca 369

                                                                       
Query: 121 caaaggacgtgggtttgcaggacttaggctgcagtttacccacatcaggtcctctgctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 caaaggacgtgggtttgcaggacttaggctgcagtttacccacatcaggtcctctgctaa 309

                                                                       
Query: 181 gggctggaatccctctgctaaaatatatggactccccccagggaacccagaaacctcact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggctggaatccctctgctaaaatatatggactccccccagggaacccagaaacctcact 249

                                                           
Query: 241 gtttctgcctctagtgggaattgaggacctggtaccattcattcaatc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gtttctgcctctagtgggaattgaggacctggtaccattcattcaatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)