BAC Information

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BAC

Clone NameMSMg01-159I22
Chromosome1 (Build37)
Map Location 76,316,265 - 76,316,556
singlet/doubletsinglet
Overlap genenone
Upstream geneDes, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
Downstream geneLOC100039137, Tfdp1-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159I22.T7 (MSMg01no159_i22.b1)MSMg01-159I22.TJ (MSMg01no159_i22.g1)
ACCAG359461AG359462
length737739
length of high quality
(start - end)
325 (48 - 372)293 (78 - 370)
definitionCHROMAT_FILE: MSMg01no159_i22.b1 PHD_FILE: MSMg01no159_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:18 2005CHROMAT_FILE: MSMg01no159_i22.g1 PHD_FILE: MSMg01no159_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGGCCAGGTGCTGGGATGGGTATGTTAGTCACTTTCTTTGTA
GATGTGACAAAATACCTGAAAGAAGGAAGGGTTTGTTTGCTTCAAAGTTT
AGGGGTTCATTAAGGAGGGGAAATCATAGTGACAAGACCTTGTGGCAGCA
GGTCACAATGAGTCTGCAGTCAGGAAGCAGAGAGAGATAAATGCTGGTGC
TTAGCTTCCTTTCCCCTTGTTCAAGGAACCACCCCAGCTGATAGAAAGGT
ACTGCCAACATTTGGGGTTAGTTTTCACACCTCAGTTAACCCAATCTAGA
GACTCCCTCACAAACATGCTGTATGTTTGACCCCCACATAATTTAAATCC
TGTCAAGCTGGCAAGCGATATGACCGCAAGCAGGCAGCAGTAGTGATCGA
GAACATTAGCAGAAGGTTCTAGTTAGTAACTCGAGTCTTGAGAAGAAGAT
GAGGACACTGATTCTGAGTGGTGACAGGAAAGGAGAGACAGGGACACAAC
AGGCCCCTTTCTCCAAGTAGATAGTCCCTTTTTCTTTTAACCTTTAAATA
GAGACTTGCACTTTATTCTGAAAGTCTGTGTATAGATAGTCCAGCAAAAT
ATTGAAGACAACTTTGAATGTCAGAGAAAATGCATTAATTATTAAATCTG
AAGATACAGTATGTACCTGACACACTGTTGAATTTTC
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTGTGTTAGCAGAGCTTATGGA
CAAGGCATAAATCCACCCACAATTCATTGGCGCATGGAACCCTTTCTGTC
ATGCTCACTGGCAACACTCTAAGACATCTCCTTCTCCTGCTTGGCAATTG
TCTCTTCTTAACCCTGTTGGCACCTCTGTGTCTTGAAATCTCTCTTTATT
CATCATCAGGCAAAATGGGTTAATTTTTATCCATGGACTTTTTAATTGTG
TCCCTTTGGATGTCCAAAGATAATTGGACTTTCTGGATGGCTGGAAAGTA
TTTTCATTTGTTTTTTTTTTTTGTTTCGCCCCCGCCCCCGCTTTTCTTTC
TTTCTCTTCTCCATGCACTAAAGCCCCCTGATAAAAAAAAATAAAGCAGC
GATTCCTCCAAGTCCTGACATTCAGAGGGAGGAAAACTGCAGAGGAGGAA
GCCACAGAGGAAGAAGCTAGGGCATTTCCAGAGTTACCTAGCATTAGAAA
TCTTAAAGAACCACACAACAAATCAAGACAAAACTAATTATCCCAGAATA
AAACCAACCCAATCCTCCTTATGCTTTTGTAAGGCTGCCAGCTGCTGCCA
TAATGGAAGTGCGCCTCTGCGTTTTTTTTTTTTCCTTAACAACCCTACAC
CTTATTGCACTGATACTCATATTATCCTAACCTCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_i22.g1 MSMg01no159_i22.g1 CHROMAT_FILE:
MSMg01no159_i22.g1 PHD_FILE: MSMg01no159_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:18 2005
         (293 letters)



>mm_chr1_76316065_76316757
          Length = 693

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtgttagcagagcttatggacaaggcataaatccacccacaattcattggcgcatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtgttagcagagcttatggacaaggcataaatccacccacaattcattggcgcatgg 260

                                                                       
Query: 61  aaccctttctgtcatgctcactggcaacactctaagacatctccttctcctgcttggcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccctttctgtcatgctcactggcaacactctaagacatctccttctcctgcttggcaa 320

                                                                       
Query: 121 ttgtctcttcttaaccctgttggcacctctgtgtcttgaaatctctctttattcatcatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtctcttcttaaccctgttggcacctctgtgtcttgaaatctctctttattcatcatc 380

                                                                       
Query: 181 aggcaaaatgggttaatttttatccatggactttttaattgtgtccctttggatgtccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggcaaaatgggttaatttttatccatggactttttaattgtgtccctttggatgtccaa 440

                                                               
Query: 241 agataattggactttctggatggctggaaagtattttcatttgttttttttt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agataattggactttctggatggctggaaagtattttcatttgttttttttt 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)