BAC Information

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BAC

Clone NameMSMg01-159L06
Chromosome1 (Build37)
Map Location 92,982,017 - 93,100,706
singlet/doubletdoublet
Overlap geneLrrfip1, Gm817, LOC665766, Ramp1
Upstream geneIqca, Cxcr7, Cops8, Col6a3, Mlph, Prlh, Rab17
Downstream geneUbe2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2, Hdac4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159L06.T7 (MSMg01no159_l06.b1)MSMg01-159L06.TJ (MSMg01no159_l06.g1)
ACCAG359572AG359573
length712712
length of high quality
(start - end)		311 (52 - 362)281 (81 - 361)
definitionCHROMAT_FILE: MSMg01no159_l06.b1 PHD_FILE: MSMg01no159_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:28 2005CHROMAT_FILE: MSMg01no159_l06.g1 PHD_FILE: MSMg01no159_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,100,399 - 93,100,706)(92,982,017 - 92,982,297)
sequence
NCCAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGGACAGTGTAAGATACTAGGAGGTAGGGGCAGATGGAG
CCTGTGTCTAGATTGGCGTCTGTCTGTCTTTAACATCTTTCTCCTGCCTA
AATTGACATCTCAGAGCCTGAAGCTGTAAGCCAACTGTGCTGCTTGGCTC
TTTTGTCAGTTTGAAACTAGGTCATCTGGGAAGACAGAACCTTAACTGAG
AAAACGTCTCCATCAGATCTGCCCATGGGCAAGCCTGTGGGGGGAATTCT
CTTGATTAGTGATTGATAGGGGACCCAGGCCATCGTGGGTGGTGCCAACC
TGGGCAGGAGGATTTATTTACGCCCACCACCCAAACTGAGAAAGCCACGA
GAGGGCCAACCAATCTGCCATGACCCTTGCTTCAGTTCCTGCTTCCAGGT
TTTGGACTTGGTTGAGTTCCTGTCCTAACTTCCCTGGATGATGGACTGTA
TGCTATAAACTGAAATAAACTCTTTCCTCTCTGGGTTGTTTTTGGTTTTG
CTCTTTATTATAGCAACAGAAAGCAAAATAGGACACCAACTTAGTATTTC
TCGTGAAGTGGGAAACCAGCCAGTTTCTTTGAAAAAATTGACAACAGTAC
CATACAGTCCAGTTGTTCTATTTCTTAGTTATATAGAAATGAGGTTCACC
TGTGCTCATGCN

NCAGCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGATGTTTTGAGTGCTCATG
GGTGAGAGTGGAAGGGTGAGAGTGAGGGCAGACATCCTAGTGAAGAAACC
AGAGCCAGAGGGAGGCTCAGAGCACTGGGGAAGGCCTGGGATCTGTCAAG
GATTGTTGGGCCTTTCAGAAGGTTAAATTGGGCACATTTTAATTAAGCCT
CATGATCCAAACAGATTAATCTGAGTTAAATGACCTAATACCTTCCTGTT
CTTAATGTCATTTTTCCCCTTCTGGAAATAAGTTTCTTGTATAAGATTTA
ATTTATTTTAATTATTTTATACCCCCCTTCCCCCACTTCCATTCCATTTC
TAAGCTTCAGATTACATACATACACACACACACACACACACACACACACG
CACACACACACACACACACTCTCTGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGTAAGCCAACAGTCTCGGCTTTCCCAAACTGGCTGAAC
AGGTTGCTTGAGCCTTCTGGAAACCTGTTTAGGATTGCCTGTGCTTTTTT
TATATGTCCCCTTCTAAGCTTCTCTAGTTCCAGACTTCAGAGACCTCCTA
GTGCAAGCCTTCTGTCCTGTCACCCTTTCCACTGACCCCTGAGCCTTTTA
AGTACCTCGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_l06.b1 MSMg01no159_l06.b1 CHROMAT_FILE:
MSMg01no159_l06.b1 PHD_FILE: MSMg01no159_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:28 2005
         (311 letters)



>mm_chr1_93100373_93101083
          Length = 711

 Score =  596 bits (308), Expect = e-175
 Identities = 308/308 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaggacagtgtaagatactaggaggtaggggcagatggagcctgtgtctagatt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ggaattcaggacagtgtaagatactaggaggtaggggcagatggagcctgtgtctagatt 275

                                                                       
Query: 64  ggcgtctgtctgtctttaacatctttctcctgcctaaattgacatctcagagcctgaagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ggcgtctgtctgtctttaacatctttctcctgcctaaattgacatctcagagcctgaagc 215

                                                                       
Query: 124 tgtaagccaactgtgctgcttggctcttttgtcagtttgaaactaggtcatctgggaaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 tgtaagccaactgtgctgcttggctcttttgtcagtttgaaactaggtcatctgggaaga 155

                                                                       
Query: 184 cagaaccttaactgagaaaacgtctccatcagatctgcccatgggcaagcctgtgggggg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 cagaaccttaactgagaaaacgtctccatcagatctgcccatgggcaagcctgtgggggg 95

                                                                       
Query: 244 aattctcttgattagtgattgataggggacccaggccatcgtgggtggtgccaacctggg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  aattctcttgattagtgattgataggggacccaggccatcgtgggtggtgccaacctggg 35

                   
Query: 304 caggagga 311
           ||||||||
Sbjct: 34  caggagga 27


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no159_l06.g1 MSMg01no159_l06.g1 CHROMAT_FILE:
MSMg01no159_l06.g1 PHD_FILE: MSMg01no159_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:29 2005
         (281 letters)



>mm_chr1_92981817_92982497
          Length = 681

 Score =  543 bits (281), Expect = e-159
 Identities = 281/281 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatgttttgagtgctcatgggtgagagtggaagggtgagagtgagggcagacatcctag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgatgttttgagtgctcatgggtgagagtggaagggtgagagtgagggcagacatcctag 260

                                                                       
Query: 61  tgaagaaaccagagccagagggaggctcagagcactggggaaggcctgggatctgtcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaagaaaccagagccagagggaggctcagagcactggggaaggcctgggatctgtcaag 320

                                                                       
Query: 121 gattgttgggcctttcagaaggttaaattgggcacattttaattaagcctcatgatccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattgttgggcctttcagaaggttaaattgggcacattttaattaagcctcatgatccaa 380

                                                                       
Query: 181 acagattaatctgagttaaatgacctaataccttcctgttcttaatgtcatttttcccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagattaatctgagttaaatgacctaataccttcctgttcttaatgtcatttttcccct 440

                                                    
Query: 241 tctggaaataagtttcttgtataagatttaatttattttaa 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctggaaataagtttcttgtataagatttaatttattttaa 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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