BAC Information

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BAC

Clone NameMSMg01-159M10
Chromosome1 (Build37)
Map Location 129,818,208 - 129,818,498
singlet/doubletsinglet
Overlap geneRab3gap1
Upstream geneLOC383559, Mgat5, LOC667090, Tmem163, Acmsd, Ccnt2, Ysk4
Downstream geneZranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111, Ubxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159M10.T7 (MSMg01no159_m10.b1)MSMg01-159M10.TJ (MSMg01no159_m10.g1)
ACCAG359623AG359624
length747740
length of high quality
(start - end)
316 (44 - 359)292 (73 - 364)
definitionCHROMAT_FILE: MSMg01no159_m10.b1 PHD_FILE: MSMg01no159_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:33 2005CHROMAT_FILE: MSMg01no159_m10.g1 PHD_FILE: MSMg01no159_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTAGGAATTCAGTAAGAAGGTTACCTATTCAGTAACATTCAAATTT
ACATCCAGTAGAGACAGTGAAACTAATTAGGCATTACAAAGAACGGAGCT
GGAATAGCTCAGAGCTGGTCTGCACAGTGTTTACTTGAGACAATAGCCAG
TCTTACCCAAACAAGGCCTAGGGAATAGGTGGGTTTACCATAAAAGAGTT
AGAGAATCCCCCGAGACAGGGTTCTTCACTAGGCCCAAAGAAATCAGGCA
TTTACTAAGAAGCCCTGGTGGTGGTCTTAACAATAGACTAGCTTTACACC
TGGCTCCCTTCATTGNGTCCCCGGCCTGGTCCCCGCCTTCTTTTCATGTA
TGCATTCCTTATGCCCCACGTCACACAGAAGAATGATTCTTGCCTGGTTT
CTTATTATTCTTCTGAATAAAAAGTATGATGCTCGACCTGAAAAATTACA
TTCAGATTCTACACAACCTCTTGTGTTGCGAGTGTCTGTCATTCGCCAAC
TCCTTGTCCATCTGCAACCAGAGACCCATCCTACAAGGTACCTTGAGGGT
CTGTGGCAGAAAACCTAATAACATATACGTCCTTCTTCTAGGAATGTCAA
GGCTTGAACCTGCTGGTCATTGCTGATGCTGAAACTACCTACGGTTGTTG
CTTATTGGCTTTTACCACATGGCTTGCCTACTACGTTTTTTATTAAN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTTTGTAGACCAGGCTCAGTCTGGCTT
TCTTGAACTCACAGAGATCTATATGCCCCTGCCTTTTGGTTGCTGAGATT
AAAGATGTATACTTCTTTTTCCTTTCTTTAAGCTTATCTCTCCAGATCTT
CCAAAACCCATAGCTTTTCCTTATTTCCCTTCTTACATTTAGTACTCATG
GAGATATTCTCGCCATATTTTCTATATAGGTATGCCTACCTTTACTCTGT
ATCACCTGACATTAAATTCAACTGATATTAAAATAGTACTTACTAATGAC
AATGCTGTTTCTTTTTAGCCCCCCTCACCCCTGTTTCTAAATATTTATTT
ATATTATATATACGACCACACTGCTGAAACTGTCTTCAGACATACCAGAA
AAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGCCGCG
AAACCTCTGGGAGAGCTGTTAGTGTTCTTAGCTGTTGAGCCATTCTTAGG
CTCTAGTTCTGCCCTTTGCTTTTGTTTTTTGTTTAGTACTTGCAAAAAAT
TCACCCACCGATTTCTTATTTCAATCGTTTACCCTCTTTTATTTGTACCT
TTTTTTTTTCCACTGCTCCACTTTTTTTTTTTTAATACTCTCTTTCTTAC
CCCTTTCTTTTTTTCTTATTTTTTAATTCTCCCCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_m10.g1 MSMg01no159_m10.g1 CHROMAT_FILE:
MSMg01no159_m10.g1 PHD_FILE: MSMg01no159_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:33 2005
         (292 letters)



>mm_chr1_129818008_129818699
          Length = 692

 Score =  563 bits (291), Expect = e-165
 Identities = 291/291 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttgtagaccaggctcagtctggctttcttgaactcacagagatctatatgcccctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttgtagaccaggctcagtctggctttcttgaactcacagagatctatatgcccctgc 260

                                                                       
Query: 61  cttttggttgctgagattaaagatgtatacttctttttcctttctttaagcttatctctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttggttgctgagattaaagatgtatacttctttttcctttctttaagcttatctctc 320

                                                                       
Query: 121 cagatcttccaaaacccatagcttttccttatttcccttcttacatttagtactcatgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagatcttccaaaacccatagcttttccttatttcccttcttacatttagtactcatgga 380

                                                                       
Query: 181 gatattctcgccatattttctatataggtatgcctacctttactctgtatcacctgacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatattctcgccatattttctatataggtatgcctacctttactctgtatcacctgacat 440

                                                              
Query: 241 taaattcaactgatattaaaatagtacttactaatgacaatgctgtttctt 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaattcaactgatattaaaatagtacttactaatgacaatgctgtttctt 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)