BAC Information

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BAC

Clone NameMSMg01-159M11
Chromosome1 (Build37)
Map Location 129,818,208 - 129,818,488
singlet/doubletsinglet
Overlap geneRab3gap1
Upstream geneLOC383559, Mgat5, LOC667090, Tmem163, Acmsd, Ccnt2, Ysk4
Downstream geneZranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111, Ubxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159M11.T7 (MSMg01no159_m11.b1)MSMg01-159M11.TJ (MSMg01no159_m11.g1)
ACCAG359625AG359626
length723721
length of high quality
(start - end)
314 (51 - 364)281 (80 - 360)
definitionCHROMAT_FILE: MSMg01no159_m11.b1 PHD_FILE: MSMg01no159_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:34 2005CHROMAT_FILE: MSMg01no159_m11.g1 PHD_FILE: MSMg01no159_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGTAGGAATTCAGTAAGAAGGTTACCTATTCAGTAACATT
CAAATTTACATCCAGTAGAGACAGTGAAACTAATTAGGCATTACAAAGAA
CGGAGCTGGAATAGCTCAGAGCTGGTCTGCACAGTGTTTACTTGAGACAA
TAGCCAGTCTTACCCAAACAAGGCCTAGGGAATAGGTGGGTTTACCATAA
AAGAGTTAGAGAATCCCCCGAGACAGGGTTCTTCACTAGGCCCAAAGAAA
TCAGGCATTTACTAAGAAGCCCTGTTGGTGGGCTTAACAATAGACTAGCT
TTACACCTGGTTCTCTTCTTAGCGCCCCCCGCCTGGTTCCCGCCTTCTTT
TCATGTATGCATTCCCCACCCCCCATGACACTCGGAGGATGTTTCTTGCC
TGGTTTCTTATTATTCTTCTGAATAAAAAGTATGATGCTCGACCTGAAAA
ATTACATTCAGATTCTACACAACCTCTTGTGTTGCGAGTGTCTGTCATTC
GCCAACTCCTTGCCCATCTGCAACCAGAGACCCATCCTACAAGGGACCAA
GAGGGTCTGTGGCAGATAACCTAACAACATATAAGTCCATCATCTAGGAA
TGTCAAGGTTGGACCCTGCAGGCCAGGGTTGATGCCTATACTACCGACCG
ACGCTGCTTATTGGCTTTGCCCN
AATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTGTAGACCAGGCTCAGT
CTGGCTTTCTTGAACTCACAGAGATCTATATGCCCCTGCCTTTTGGTTGC
TGAGATTAAAGATGTATACTTCTTTTTCCTTTCTTTAAGCTTATCTCTCC
AGATCTTCCAAAACCCATAGCTTTTCCTTATTTCCCTTCTTACATTTAGT
ACTCATGGAGATATTCTCGCCATATTTTCTATATAGGTATGCCTACCTTT
ACTCTGTATCACCTGACATTAAATTCAACTGATATTAAAATAGTACTTAC
TAATGACAATGTTGTTTCTTCCCCCCCCCCCTCAGTTCTGTTTCTAAATA
TTTATTTATATTATACCCCCCACAACACTGATGTAGCTGTCTTCAGACAT
ACCAGAAAAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGT
GGCCGCGAAACCTCTGGGAGAGCTGTTAGTGTTCTTAGCTGTTGAGCCAT
TCTTAGGCTCTAGTTCTGTTTTTTGTTCTTGCTTTTGACTCTGCCTCCGT
TTTTTTCCTTCGTTCTTTTTTTTTTTCCCACCTTTTTTCATTTTTTCCAT
TTTTTTTTTTCCCCTCTTCATTTTATTTTTTCCTCTATCTACACCCCCTT
TTATTTTATATTCACGACTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_m11.g1 MSMg01no159_m11.g1 CHROMAT_FILE:
MSMg01no159_m11.g1 PHD_FILE: MSMg01no159_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:34 2005
         (281 letters)



>mm_chr1_129818008_129818688
          Length = 681

 Score =  543 bits (281), Expect = e-159
 Identities = 281/281 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttgtagaccaggctcagtctggctttcttgaactcacagagatctatatgcccctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttgtagaccaggctcagtctggctttcttgaactcacagagatctatatgcccctgc 260

                                                                       
Query: 61  cttttggttgctgagattaaagatgtatacttctttttcctttctttaagcttatctctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttggttgctgagattaaagatgtatacttctttttcctttctttaagcttatctctc 320

                                                                       
Query: 121 cagatcttccaaaacccatagcttttccttatttcccttcttacatttagtactcatgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagatcttccaaaacccatagcttttccttatttcccttcttacatttagtactcatgga 380

                                                                       
Query: 181 gatattctcgccatattttctatataggtatgcctacctttactctgtatcacctgacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatattctcgccatattttctatataggtatgcctacctttactctgtatcacctgacat 440

                                                    
Query: 241 taaattcaactgatattaaaatagtacttactaatgacaat 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaattcaactgatattaaaatagtacttactaatgacaat 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)