CTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTTTTAACAGTTTCTTTCCAATACTACTCTACTTTGAAATGA
GTCTTGATTTGGCAGTATCTTAAAATTTTTTGACTTCATTTCATATGAAT
CTACCTAGCTCTTTCTGGTAATGAGTTGTATATCAATTTAATACGAATGA
TTTAATTTTCCCAATTGAGAAACTCTTAAACTCTGTTTAGTTTTAATTTT
TACAATGACATTGAATATCTTTTAATATACAAGTTCATGAAAGTGTGCAT
AAGATTTTTTAAAATATAATTCTGACTAAAAAGTTATAGTAATAGAATGT
TTAAAAATCTTCCATTAATTCCCAGCANACCATTCTCTCTCTGCCTCTCC
TCAATCTCAATCACACCCCTGATAAAAACAAACAGGAGCATGTTGTCCTC
TAAAAGCCTCTACCCAGCAGTTGACTGAGACAGATACAGACACCCACAGT
CAAACAGTGGATAGAGCTTGGCAACTCTTATGGCTGAATATAAAAGACAG
ATTGTATGCCTACAAGGGGATAGACACTCCTTTGAAAGATCTAAGATTCC
AGTCACCTGCTACTGTTGGTTTTCTCATAGACTGATACCCCTTACCCATA
TTTTTTCTTGTTTTGGACCTAGGACTTCCTTTCCTGTTTTTTAAATGTTT
TTTTTGACTCCTCTGTTTTTTTATA

NATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAACAAGTTTGTGATTGC
ACCAGAAATATTTGGTAAGAAGTGAATGCTTATTTTCCTGTAACATATAC
AATATATCACTTTTAGGGGTATGAAATGCCTTCCTTCCTGTCTCACTGAA
CATCCCACTGTATGGATTTTACAAAATTGAGTGGCTGAAAAGATGGCCAA
TTGCTCAAAGCAAATAAATACTACATACTCAGAGGAACATCATACACAAA
GTAGAAGAAGATAAAGACGAAGAAGAAGACAAAGACGAAGAAGAAGAAGA
AGAAGAAGAATATTTTTTTTTCCCCCCCCCCCCCCCCGATTTGTTTTTAT
TATTACCACCCCCTTTGTGCCCCCCCCCTTAAAAAAAAAAACCCCCCCCT
TTTTATTTTTCCCCTATTTTTTCCCTCCCCCCCTCCCCCTCTTTTTTTTT
TTTTTATCCACCCCCCCCCACCATTTTCTTTTTTAATTAAAATAAAATTC
TACATAACCTTTTTTTTATCTCAAATTCACCCACCCCCTCCTTCTTCCCT
AATATACTTTATTTTTTTTCTTTATTATCTCCCCCCCCTTTTTCTTTTTT
TCTTCAACTATTTCCCCCCCTTTTTCCTTCCCCCTTATTTAATTACTACA
CCCCCCCCATTTTTTTTTATATTACTTTTCTATCTATTCTCCCCCCATTC
TTCTTTCCCTCTTTTCTTCTCTCTCTCCTTACCCCN

Query= MSMg01no159_m12.b1 MSMg01no159_m12.b1 CHROMAT_FILE:
MSMg01no159_m12.b1 PHD_FILE: MSMg01no159_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:34 2005
         (313 letters)



>mm_chr1_44903351_44904063
          Length = 713

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttttaacagtttctttccaatactactctactttgaaatgagtcttgatttg 63
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 513 ggaattccttttaacagtttctttccaaaactactctactttgaaatgagtcttgatttg 454

                                                                       
Query: 64  gcagtatcttaaaattttttgacttcatttcatatgaatctacctagctctttctggtaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gcagtatcttaaaattttttgacttcatttcatatgaatctacctagctctttctggtaa 394

                                                                       
Query: 124 tgagttgtatatcaatttaatacgaatgatttaattttcccaattgagaaactcttaaac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tgagttgtatatcaatttaatacgaatgatttaattttcccaattgagaaactcttaaac 334

                                                                       
Query: 184 tctgtttagttttaatttttacaatgacattgaatatcttttaatatacaagttcatgaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tctgtttagttttaatttttacaatgacattgaatatcttttaatatacaagttcatgaa 274

                                                                       
Query: 244 agtgtgcataagattttttaaaatataattctgactaaaaagttatagtaatagaatgtt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 agtgtgcataagattttttaaaatataattctgactaaaaagttatagtaatagaatgtt 214

                     
Query: 304 taaaaatctt 313
           ||||||||||
Sbjct: 213 taaaaatctt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no159_m12.g1 MSMg01no159_m12.g1 CHROMAT_FILE:
MSMg01no159_m12.g1 PHD_FILE: MSMg01no159_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:34 2005
         (284 letters)



>mm_chr1_44791338_44792021
          Length = 684

 Score =  536 bits (277), Expect = e-157
 Identities = 280/281 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaaacaagtttgtgattgcaccagaaatatttggtaagaagtgaatgcttattttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaaacaagtttgtgattgcaccagaaatatttggtaagaagtgaatgcttattttcct 260

                                                                       
Query: 61  gtaacatatacaatatatcacttttaggggtatgaaatgccttccttcctgtctcactga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaacatatacaatatatcacttttaggggtatgaaatgccttccttcctgtctcactga 320

                                                                       
Query: 121 acatcccactgtatggattttacaaaattgagtggctgaaaagatggccaattgctcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatcccactgtatggattttacaaaattgagtggctgaaaagatggccaattgctcaaa 380

                                                                       
Query: 181 gcaaataaatactacatactcagaggaacatcatacacaaagtagaagaagataaagacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaaataaatactacatactcagaggaacatcatacacaaagtagaagaagataaagacg 440

                                                    
Query: 241 aagaagaagacaaagacgaagaagaagaagaagaagaagaa 281
           |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 aagaagaagacaaagaagaagaagaagaagaagaagaagaa 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)