BAC Information

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BAC

Clone NameMSMg01-159O19
Chromosome1 (Build37)
Map Location 89,981,645 - 90,123,978
singlet/doubletdoublet
Overlap geneUgt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766
Upstream geneAkp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561
Downstream gene6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159O19.T7 (MSMg01no159_o19.b1)MSMg01-159O19.TJ (MSMg01no159_o19.g1)
ACCAG359729AG359730
length753750
length of high quality
(start - end)		324 (44 - 367)293 (73 - 365)
definitionCHROMAT_FILE: MSMg01no159_o19.b1 PHD_FILE: MSMg01no159_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:44 2005CHROMAT_FILE: MSMg01no159_o19.g1 PHD_FILE: MSMg01no159_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,123,658 - 90,123,978)(89,981,645 - 89,981,934)
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGCCATCTCACTAACTTCAACAGCTGTTCAATACCCAAAGTTTCTTA
ATAAAAGACGAACCAGAACAGAAGTCCCTCTCAGAGGACCAAAGTTCCCC
AGATACTTCCTCCTCCAGCCCCAGTTCCTCAACCCTCAACCCAGAATAGC
ACTTCAGAGGATTCCCAGGACCTGAACAGTGGCCTTGTCACGAAGTCCTC
GTCTGGGTAGAACAAAAATGTTGGCTGAGGAAGATCACTGCTTTTTATCT
AATATCCACCAAAGAAAATATGAACAATGGGAGGACCCAATGTCCACCAC
AGACACTCGGCCTCCTCTATGGTACCCCTCATGAGGAACAGGACTCCTTG
CATGGCTGGAGGTTTCACCACAACCATCACAGATATCTCCCAGACCCTTG
GAACTTTGAGATCCAACTGCCTCCCCAAGGCACTCTCAACCAGAGCTCTG
GGTACATTGGGCTGAAATCAAAGCTTCACATCAAGTTTCCATTAAATATT
TCTATACCCAGAGGTGTGTGCTGATGTATGGTGGCCTGTTTGGGAAAAGG
AAATCACTAGTGGGGGTTACAACCAAGGATCAAAGGGGTGGAGGTAGAGC
CCAGTATAGAAAGGTGGAGTCAAGGCAGCTGAAGGGAGGGAAGAGCATGG
GATGGCTGTGAGGAGAGACCTCCTTCGACACTAGGGATACTCAACAGCCA
GGG

GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGACCCATTCTCCATGGGTGGAACCCA
TTGTCATTTATTCTAGCCTGTATCTCTGAGTAAGAGGGCTTCTTGTAAGC
TTTCTAGTTGAATAAACTGCACACTGCTTCTGTGCTTATACTGGGTAGGG
CTGCTAGCAGGCTTTGCTGATGCTCAGTGGTGGAAGTCTCTCTGCAGGGC
CAGTTGGTAGGTCTTTTTGACTGAAGGGGATTACTGATCAACTTCGCTAA
TTAATCACAAATATGCCCTTTGGATCTCTGAGATCCATAGGATTGGGCTG
ATTTCCTGTCTGTTTTTGATCACTACCCACCGGGTCTAGCTGAATGAAAC
TTCTGCCTTATAACGCCCGCATACCTTATTAATAAGGGTTTTCCATAGGA
ACAAAACTGATAGGACAAATATATGTTGAAAGGGGGGTTGTTACATTGGA
TTAGTCCAGTCCAGATAGTCTAATAATGGCTGTCTTTACACTGGAGAGCC
TGAGAATTTGATTACTGGTCAATCTGTGACACTGTCTACCTAGCAAGTCT
TAAGATGGCCTTGAAGTCCTAGACAATCCCCAGAGAGCCACTGGTCTTCA
GTCAGTTTTGGAACCTCAGTGAAGCTGAGTTCTGATATCAGGAAAGGAAT
ATATTTCACGTGCCTCCCACCCGATCAAATAATTGCCTCCCCGCACCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_o19.b1 MSMg01no159_o19.b1 CHROMAT_FILE:
MSMg01no159_o19.b1 PHD_FILE: MSMg01no159_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:44 2005
         (324 letters)



>mm_chr1_90123455_90124178
          Length = 724

 Score =  621 bits (321), Expect = 0.0
 Identities = 321/321 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagccatctcactaacttcaacagctgttcaatacccaaagtttcttaataaaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ggaattcagccatctcactaacttcaacagctgttcaatacccaaagtttcttaataaaa 465

                                                                       
Query: 64  gacgaaccagaacagaagtccctctcagaggaccaaagttccccagatacttcctcctcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gacgaaccagaacagaagtccctctcagaggaccaaagttccccagatacttcctcctcc 405

                                                                       
Query: 124 agccccagttcctcaaccctcaacccagaatagcacttcagaggattcccaggacctgaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 agccccagttcctcaaccctcaacccagaatagcacttcagaggattcccaggacctgaa 345

                                                                       
Query: 184 cagtggccttgtcacgaagtcctcgtctgggtagaacaaaaatgttggctgaggaagatc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 cagtggccttgtcacgaagtcctcgtctgggtagaacaaaaatgttggctgaggaagatc 285

                                                                       
Query: 244 actgctttttatctaatatccaccaaagaaaatatgaacaatgggaggacccaatgtcca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 actgctttttatctaatatccaccaaagaaaatatgaacaatgggaggacccaatgtcca 225

                                
Query: 304 ccacagacactcggcctcctc 324
           |||||||||||||||||||||
Sbjct: 224 ccacagacactcggcctcctc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no159_o19.g1 MSMg01no159_o19.g1 CHROMAT_FILE:
MSMg01no159_o19.g1 PHD_FILE: MSMg01no159_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:44 2005
         (293 letters)



>mm_chr1_89981445_89982137
          Length = 693

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgacccattctccatgggtggaacccattgtcatttattctagcctgtatctctgagta 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgacctattctccatgggtggaacccattgtcatttattctagcctgtatctctgagta 260

                                                                       
Query: 61  agagggcttcttgtaagctttctagttgaataaactgcacactgcttctgtgcttatact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 agagggcttcttgtaagctttctagttgaataaactgcacactgcttctgtgcttatgct 320

                                                                       
Query: 121 gggtagggctgctagcaggctttgctgatgctcagtggtggaagtctctctgcagggcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtagggctgctagcaggctttgctgatgctcagtggtggaagtctctctgcagggcca 380

                                                                       
Query: 181 gttggtaggtctttttgactgaaggggattactgatcaacttcgctaattaatcacaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttggtaggtctttttgactgaaggggattactgatcaacttcgctaattaatcacaaat 440

                                                             
Query: 241 atgccctttggatctctgagatccataggattgggctgatttcctgtctg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgccctttggatctctgagatccataggattgggctgatttcctgtctg 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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