BAC Information

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BAC

Clone NameMSMg01-160H12
Chromosome1 (Build37)
Map Location 111,829,967 - 111,830,227
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666508
Downstream geneCdh7, LOC100041429, EG626652, Cdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160H12.T7 (MSMg01no160_h12.b1)MSMg01-160H12.TJ (MSMg01no160_h12.g1)
ACCAG360133AG360134
length728841
length of high quality
(start - end)
322 (49 - 370)261 (73 - 333)
definitionCHROMAT_FILE: MSMg01no160_h12.b1 PHD_FILE: MSMg01no160_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:26 2005CHROMAT_FILE: MSMg01no160_h12.g1 PHD_FILE: MSMg01no160_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCAACTATAGAAACAGAATGGAACTGGTATGTTAGAAAGAAG
GTACAGGTATCACATGGGATGGAACTGGAAGATAGAGCTCCTTAATCCTG
TTATAACTCAAATGATGCCATCTGCCCAGATGCAAAGACATGAAGCTTTG
TAGAACTAGTGTTTGCCTTTCTGTGTTTCAACCTCCATGTGCCCCAATCG
TTTTTCACTACGACCCCTTTTCCCTTTTGAAATGGAAAGATTCACTCTAT
AATATTGCACATTGTAAGGCTCTAACAATTTTTATAATAAAATTTCTCAC
AATACAGTCTAATTATTTTCCCGCTTCAATTGCTTCCCTCTATCTCCTCC
CATATGTTTCTCTGCACCTTTCCTTGAATTTGGTATACATCAAAAGTTTC
TGAGAGAATACTGAACTTTGAAATTTTCAAAAATATTAGAATTATATGAG
TAACTCTTACAGATGTATTTGGTTTATTCAAATATAAGTGACTTACAGAT
GTATTAAACTCTTTTTGCAGCATGAGGTGGCCATAGAGCTTGTGGACTAA
GGTTGAAATATTATGGTTAAATATAATAAATTTTGGTTCATTTAATGGCT
AATTTTCATTGTCAATTTGAGTGAGTTGATTCCAACTAAGAAAAACTCCA
CTGGTGTTTCAGGAGAGATTTAACTGTG
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTGATATAACTTCAAAGGAAATATAT
TTGTTTAATCAAGTTGAATTCCATTACAAATTATGCTCAGCCCTGAAAAC
ACACAAACAAGCAATAGTATACACACTCTGTGGCTTATATTTAAGAACAC
ATTTTTATACACACAATGACATATAGATGTAGTAATATAAGAAAAGTCAT
TTTACATGAAAGATTTATGGTTTACATTTGCTTCCATAAATTTGAAGAGA
TTAGGGTGGATACTGGATGGAAGGTTTTGGAAGTAAAATATGTTTTATAT
ANATTTTTTTTTTTTTCCCCCCCCCCCCCCAAAAGAAATATTATATATAG
TTATAAGTTGTTTCCCCCCCCCACAAAAAAAAAAAAAAATTCTCTAGTTT
GATGATTTTATTTTTTCATAATATACTATCTTATTTTAATTAATTATATA
TTAATATAATCATTCACATATCTCTTCTTTCCTTCTCATTTTTTACAACC
TCTTTTTACTCTAATACATCTATATACATATAAATTATCTCATCTGATTA
ATTCTTACCTTCAATAATTCCTCTTACCCAGACATCAACAAAATTATCTT
CAAAATATATTTATTATTTTATTTTCTATTCAATTGTTCATTTTTCGTGT
TGTAGAGACACATCGTTAAATCTAATTCATAATAATTATCATAACAATAT
GTCACATCTCTTAATATGTTTTGATACTTATTACTATATTCGTTATAACA
ATATTTATATCCCTTTTTACACTACTATTATATACACAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_h12.g1 MSMg01no160_h12.g1 CHROMAT_FILE:
MSMg01no160_h12.g1 PHD_FILE: MSMg01no160_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:26 2005
         (261 letters)



>mm_chr1_111829767_111830427
          Length = 661

 Score =  482 bits (249), Expect = e-140
 Identities = 258/261 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttgatataacttcaaaggaaatatatttgtttaatcaagttgaattccattacaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttgatataacttcaaaggaaatatatttgtttaatcaagttgaattccattacaaatt 260

                                                                       
Query: 61  atgctcagccctgaaaacacacaaacaagcaatagtatacacactctgtggcttatattt 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgctcaaccctgaaaacacacaaacaagcaatagtatacacactctgtggcttatattt 320

                                                                       
Query: 121 aagaacacatttttatacacacaatgacatatagatgtagtaatataagaaaagtcattt 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaacacatttctatacacacaatgacatatagatgtagtaatataagaaaagtcattt 380

                                                                       
Query: 181 tacatgaaagatttatggtttacatttgcttccataaatttgaagagattagggtggata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacatgaaagatttatggtttacatttgcttccataaatttgaagagattagggtggata 440

                                
Query: 241 ctggatggaaggttttggaag 261
           |||||||||||| ||||||||
Sbjct: 441 ctggatggaagggtttggaag 461


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 661
Length adjustment: 9
Effective length of query: 252
Effective length of database: 652
Effective search space:   164304
Effective search space used:   164304
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)