BAC Information

Click to search

BAC

Clone NameMSMg01-160L02
Chromosome1 (Build37)
Map Location 72,304,077 - 72,304,384
singlet/doubletsinglet
Overlap genenone
Upstream geneAbca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg
Downstream genePecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160L02.T7 (MSMg01no160_l02.b1)MSMg01-160L02.TJ (MSMg01no160_l02.g1)
ACCAG360294AG360295
length741781
length of high quality
(start - end)
313 (47 - 359)105 (135 - 239)
definitionCHROMAT_FILE: MSMg01no160_l02.b1 PHD_FILE: MSMg01no160_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:43 2005CHROMAT_FILE: MSMg01no160_l02.g1 PHD_FILE: MSMg01no160_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTAAGTATGACAGGACACTTGGGGTAGAGGGTTGAGGAGGAGTA
TGCAAATCCTTGAAGCGTATGAAAAGAATAGCCAGCCGTGCAGGAGGGCT
TAGGTGAAGCCTTCCCCTATCCGACACACTCGGGTCTAATAGAGTGGTCA
CCACTGTGACTCCATGCAAGGCAGAGAAGTAACTGTGTTGTACTACTGCT
CATAGAACTTTCTAGAATTCCATTGTAGTGTGCTAAGGACAACTGAATGT
GCACAATGTCTCAGCAGAGGACTCTGCTACGCTACCCTACGGAGGTGCAC
GCACAGCATTTTTGGTACTGCCGCCTCTGTGGAAGTCTCTTGCCCCTCTG
CACTGAGAAGCCCAACCCACCTCCTCTTACATCTGCAGTTCTCAACCTGT
GGATCAGGACCATCAAAAAACACATATTTCTGATGGTCTTAGAACACCTC
CCCCAACCATGGGTTTATTTTCACTGCTACATTGTAGCTATAATTTTGCT
ACTGAGCCATATTGAGAAACACTGTCCTATAGATTCTCTCTGTCTCTCCC
ATTAGTGACTTTGTACAGCCTTGTGTCTGTGGGAATCAGGCTATTAGGCT
CAGTTTCTAGTCTTTCTATTGCTCTGCCCATTATAGTTCTAGGTTGCGCC
TGACTGTCCTGTGGCTGATGATTTGGAGCGGGCGGCATAAG
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTAATGTGCTTTAAATCAGGCCTGCA
AACTCACTTGGTGGTTTTTCTGCCCTAGATAATGGGAGACCCCAGCATGC
TGGACTTCTGCAGAATAAAACACTCTTTGCATTTACATACTATCTGAGTC
CCGGGTATCATTCTGCGGAGAATTACTGGACTCTACTCAAGAATACAAAA
ATAGAACAGCTGACAAATGAAAGATTGTATACATCACAAAACTGCTCCCA
TTAACCTGCTTTGGATACTTTATCCCTGTGCATAGGCTCATATGAACATT
TGAGTTCAAAGCCTTCGAACAAAATCTTGCATGTAGGATTAATAACAAAA
AGCATATACTATCTTCCTATCTCCCCTTAAAGAAAAACTGAATTCTCCTT
AATTGCTATAAACTTTTTCAATAAAGATTAATTGTGTTAAAAGTTAGTAT
TTGTTTGCTTGATTTGTTTATTTTTCAGTGATACATTTTAATAATATCTT
TGCCTCCTGACTTCTAGATACCTTCCTTCTATAATCTATTATTTTTGTCA
TATTCAATAATTGAACTTTCTAACACCCGCCTTTTCCCTAATTTTTTATC
TATCTCTTTCTCTCCCAATTTTTTTTTTATGCACCAATCTCTATCAGATC
TCCTCCTCTCCTTCTCCCTTTTTACTTTGACACTCCATTAGTTTTCTAAC
AATATATTATTAAAACATTCTCTCACTTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_l02.b1 MSMg01no160_l02.b1 CHROMAT_FILE:
MSMg01no160_l02.b1 PHD_FILE: MSMg01no160_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:43 2005
         (313 letters)



>mm_chr1_72304033_72304745
          Length = 713

 Score =  572 bits (296), Expect = e-168
 Identities = 305/308 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaagtatgacaggacacttggggtagagggttgaggaggagtatgcaaatcct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gaattcctaagtatgacaggacacttggggtagagggttgaggaggagtatgcaaatcct 293

                                                                       
Query: 65  tgaagcgtatgaaaagaatagccagccgtgcaggagggcttaggtgaagccttcccctat 124
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 292 tgaagcgtatgaaaagaatagccagccgtgcgggagggcttaggtgaagccttcccctat 233

                                                                       
Query: 125 ccgacacactcgggtctaatagagtggtcaccactgtgactccatgcaaggcagagaagt 184
           ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 232 ccgacacactcaggtctaatagagtggtcaccactgtgattccatgcaaggcagagaagt 173

                                                                       
Query: 185 aactgtgttgtactactgctcatagaactttctagaattccattgtagtgtgctaaggac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 aactgtgttgtactactgctcatagaactttctagaattccattgtagtgtgctaaggac 113

                                                                       
Query: 245 aactgaatgtgcacaatgtctcagcagaggactctgctacgctaccctacggaggtgcac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 aactgaatgtgcacaatgtctcagcagaggactctgctacgctaccctacggaggtgcac 53

                   
Query: 305 gcacagca 312
           ||||||||
Sbjct: 52  gcacagca 45


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)