BAC Information

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BAC

Clone NameMSMg01-160M14
Chromosome1 (Build37)
Map Location 90,178,380 - 90,178,651
singlet/doubletsinglet
Overlap genenone
Upstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822
Downstream geneTrpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160M14.T7 (MSMg01no160_m14.b1)MSMg01-160M14.TJ (MSMg01no160_m14.g1)
ACCAG360362AG360363
length727764
length of high quality
(start - end)
313 (36 - 348)273 (76 - 348)
definitionCHROMAT_FILE: MSMg01no160_m14.b1 PHD_FILE: MSMg01no160_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:51 2005CHROMAT_FILE: MSMg01no160_m14.g1 PHD_FILE: MSMg01no160_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAACG
GTTCCCAGGACTCAATGGGGATAACAGTAGATGAAATACAGGGGAGATGG
AACCTGAAGAGACTACATCTAGTAGATGGACATGGCACTCAGTTGAGTGA
TGGGGGCACCCACCCATCTTAAAAAATATACTGAGAATTGTCTCTGTCTA
AAGGAAATTTAGGGACAAAAATGGAACAGGCTGAAGGAAGGGCCATCCAG
AGAATATACCACTGTATTCTATCTACAGACTCCAAACCCCATCACTACTG
CTGATACCAATATATACTTACAGACAGGAGCCTTATATGGCTGTCTAANG
TGAGTCCNTGNCCGNAANTGACTAAGGCTAATGGAGAAACTCACAGCAAC
CCCCCCACAGAAAAAAAAAACCCACTGATGGAGTTAGGAGAAGGGCTGAA
GGACCTGAAGGGGATGGCAACCACACAGGAAAAACAACAGTATCAGTTAA
CCAGATTCCTCAGAGCTCCCAGGTACTAAACTAACACCCAAAGTGTATAC
ATGGGTGGGTTCATGGCTCCCAATATTTATGTAGCAGAGACCTACCATCC
GTGCAATAGGCGTCACTTGTCCTTGTGTAGGCTTGATGCCCCCGACAAGG
CCTATATCTAAACCGATTTATTGGTACCCTTTGTGTTCACATTCTTTATC
CTTCCCTTCATTTTTTACTTTTACTTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACCTGCCTCTGTCTCCCAAGTGCTG
GGCTTAAAGGCGTGTGCCACCATGCCGGGTGGCCATTCTCATTCTTAAAT
GGAAAAAGTAGCTGAAGATTGAATTTCTACAAAAACAGTAAGGTTTACGT
TTCAGAGTCTCTCTTTGTGTGGCTGCTCTGTAGTGTGTTGACTTGACCCC
TAATGTCATGAACATCTTGGTAGTAAGATGTTCTACCTGTGACCAGCAAA
GACAGCCAACTCTTTACCTTGTAATTTCGTTCTGTCACTAGGTATTGGAT
GGCCTTTTTTTGTCCCCCGCCCCCCCATAACCACTGTTTGAGTTCCAAGG
AAAATAGGCCCCCCATTAAATAAAGAATGCCCAAAGGGGGGGTGTGGCAT
AGTATAATCATTCCTATGTACTTTTATATTTTTGCTAGTGACTCCACTCT
AGGAAGGTTATCTAGGAACATCGCTATCACCCACTGCCTAAGTTCACTCA
GGATAACAAGGGTATTCATATTGTTTCTGACCCAGAATTTGTATATTAAC
GCGTATGAGAGCTGTATTCTATTACTGTGCACTTCCCTCCACCCTTATTT
ACCCTCTTCGTATCTTTTTATTTATCTCCTTTATTAATAATCTCCCCCTT
CACCTCCTTATTCTTCTTTCTCCGGCTGGATCGTTACTTTCGTTCTTGTC
ATCTTTCTTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_m14.g1 MSMg01no160_m14.g1 CHROMAT_FILE:
MSMg01no160_m14.g1 PHD_FILE: MSMg01no160_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:51 2005
         (273 letters)



>mm_chr1_90178179_90178851
          Length = 673

 Score =  480 bits (248), Expect = e-140
 Identities = 266/272 (97%)
 Strand = Plus / Plus

                                                                       
Query: 2   cctgcctctgtctcccaagtgctgggcttaaaggcgtgtgccaccatgccgggtggccat 61
           |||||||||||||||||||||||| |||||||||| || ||||||||||| |||||||||
Sbjct: 202 cctgcctctgtctcccaagtgctgagcttaaaggcatgcgccaccatgcctggtggccat 261

                                                                       
Query: 62  tctcattcttaaatggaaaaagtagctgaagattgaatttctacaaaaacagtaaggttt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tctcattcttaaatggaaaaagtagctgaagattgaatttctacaaaaacagtaaggttt 321

                                                                       
Query: 122 acgtttcagagtctctctttgtgtggctgctctgtagtgtgttgacttgacccctaatgt 181
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 acatttcagagtctctctttgtgtggctgctctgtagtgtgttgacttgacccctaatgt 381

                                                                       
Query: 182 catgaacatcttggtagtaagatgttctacctgtgaccagcaaagacagccaactcttta 241
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 382 catgaacatcttggtagtaaaatgttctacctgtgaccagcaaagacagccaactcttta 441

                                           
Query: 242 ccttgtaatttcgttctgtcactaggtattgg 273
           ||||||||||||||||||||||||||||||||
Sbjct: 442 ccttgtaatttcgttctgtcactaggtattgg 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)