BAC Information

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BAC

Clone NameMSMg01-160P04
Chromosome1 (Build37)
Map Location 139,842,407 - 139,842,715
singlet/doubletsinglet
Overlap geneLOC100043143
Upstream geneNr5a2, Rnu7-ps3, LOC100042567
Downstream genePtprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7, LOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160P04.T7 (MSMg01no160_p04.b1)MSMg01-160P04.TJ (MSMg01no160_p04.g1)
ACCAG360481AG360482
length7411,601
length of high quality
(start - end)
314 (49 - 362)---
definitionCHROMAT_FILE: MSMg01no160_p04.b1 PHD_FILE: MSMg01no160_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:03 2005CHROMAT_FILE: MSMg01no160_p04.g1 PHD_FILE: MSMg01no160_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTCAGCAGAGGGATGCTGAGATGTATGGTGTATGAAATGAG
TTTGATAGGAGAAAGGCATGAGCTGGCACTCTGTCTTGGCCCTTTAATAA
TGAGTGGACTGTATGACAGGTTTTTCTTTTTTAGCCCTGGCTGTCCTGGA
ACTCACTCTGTAGACCAGGCTGGCCTCGAACCCAGAAATCTGCCTGCCTC
TGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCCGGCATGA
CAGTTATCTTTTTAAAATCTCACTTTATTCTCTGCTACGATGGGTAAGGA
AGGTCAAATGATATTCCTTACCGCCCGACCTATATATACATCTATAGACT
TACCTAACCAGTATTTATTAACTTATAGACTATAGTGACTATATTAAAAA
TATACAATACTTTTGTGATGGCTATTTCATATCATTGCAGTCCATAATTT
GAAGAAAAAACAAGAATTGCCTCTATAAAATGCATAAGATCATGTTGTCA
GGGAGAATTCTCAGTTTTACAAGATTGAAGTTAAGAAGAGCAGAATGAAT
ATTACATCAACACTATAGTTTTAGTCATTAGAAAAAAAAGAAACATTCAT
GTCAGAAAATATTTTAAAATTTAAAAAACTTAAAAACAATTATCAGCATC
CTGCTTTCTGTCTATCCAAAGAAAGCACTGCTAACAAACCC
AAAATGAATATATGGATTTACATAACTGATAAGAAAAAGCACATGAATTC
TCACAAACATATATAGAAGACGAGAACATATTAAATATAGTTATCCCCGC
TANATATTATTCTGTTCACATTGTATAATACTAACTATATTATAATTTAT
AGATAGATAACACACCACTTTATCGTGTCATATTTACGCGCGCTGACAGG
CGCGGGTCGCCGTTGCGTGACGCGAAGAGATGGAATAATGAATAAGTGAA
GTGAGAATATAGAGAGTGAGGTATGCAGAATGCGTGATGCGCAGGGGTTT
GAGTAAACATGCGCCCACGAGACACCGCCAACGATCACACCATACAAATC
AATGATTGAGAAATAGAAAATTTATATAAAACAATAAAGACGAACGCGAT
ATATAAGAATAGAGAAAAGAGAGAGAAATCACGCCGTGACCACATACACA
CGGCTCGGACGTCTTGCCGTCCTCTCGCCCACGTGCTGATCGTGACGCTC
GTTTGAGCACGGCGCGTTGTCTTTCAGCACCCTCACAGTGCACTATTGAT
ACACATGCGCACTATTGTATGTTACTGTTAGAGATCAATAAAGATGTGAT
AACTATACGATGAGAAGATGATCGTCCATACACACAACAANCGCGATATC
ATATATACATNCGACAATCTATATATATACTGATGTGATGACGCNATGGA
CTACTCACACAGTGCTNAGTCTACGACATCTGATTATGATGACATGTGAA
TCGTAACAGGGATGAAGCGCTCGACGAACGAGAGTAGGTAGATTCAACTA
TCAGCACACCACGTGTGATACGATAGACTACGACCGAGATGATGGAAGAT
GATATGTACACTATTGATGTATGTAGTATACATAGTGTGTCGAGTGCAGT
TATTATAGATTNGTACGCATCTGGATGTAGAAGGTGCGATGATATGCACA
CAGCGCACTATGAAGAGGACTNTATATACTGGATACGAGAAAGAACTACT
GATCGAGTTGATGATGTGCGCACTANGAGTGATGGACATTACAGTGTATA
CAATCTGTGAGTGATGTGCACATAGCACACTCAATGAACTATAACAACTG
ATNGAATATAGANTCGAGTATCATAGTGACATGTATACGTATACATCATA
CTGGTGTAATGACAGAGACACGATTNTGATGGACTACGGATGGATGCATA
CATGTTGCGTGANGAGATAGTATGCTGTATTGCATANTGTGTTGAGAATA
TATCGATGTATGAGCTATATTATCAACGCGAGACGCTGATATATGTAATG
TGCGTATCACGCGAGACCNAAGTACAGATGATAGAGTATAGATGCGCANC
TACTGATACTGTGTGTCGAGNTGGCGCCGCGTCGCGTGATATGNANTATG
GTCAGATGAGACGACTGTAGTAANAAGGATGAAGGAGATGTGAAAGAATG
AGACGAGNCGTGATAGAGCGTGAGTNAGGACAATGAGACTATATAACGAT
AGAGGTGATGTATGTAGAGAGATAGTCACGACGTGAACGATAGTGACAGA
CGTATAGAGTACTGATAGAATGACAGAGAGATATGGTGAGACAATCGGTA
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_p04.b1 MSMg01no160_p04.b1 CHROMAT_FILE:
MSMg01no160_p04.b1 PHD_FILE: MSMg01no160_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:03 2005
         (314 letters)



>mm_chr1_139842400_139843113
          Length = 714

 Score =  559 bits (289), Expect = e-164
 Identities = 304/309 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattcagcagagggatgctgagatgtatggtgtatgaaatgagtttgataggaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gaattcattcagcagagggatgctgagatgtatggtgtatgaaatgagtttgataggaga 257

                                                                       
Query: 65  aaggcatgagctggcactctgtcttggccctttaataatgagtggactgtatgacaggtt 124
           |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 256 aaggcatgagctggtactctgtcttggccctttaataatgagtggagtgtatgacaggtt 197

                                                                       
Query: 125 tttcttttttagccctggctgtcctggaactcactctgtagaccaggctggcctcgaacc 184
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tttgttttttagccctggctgtcctggaactcactctgtagaccaggctggcctcgaacc 137

                                                                       
Query: 185 cagaaatctgcctgcctctgcctcccgagtgctgggattaaaggcgtgtgccaccacgcc 244
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 136 cagaaatctgcctgcctctgcctcccgagcgctgggattaaaggcgtgtgccaccacgcc 77

                                                                       
Query: 245 cggcatgacagttatctttttaaaatctcactttattctctgctacgatgggtaaggaag 304
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 76  cggcatgacagttatctttttaaaatctcactttattctctgctacaatgggtaaggaag 17

                    
Query: 305 gtcaaatga 313
           |||||||||
Sbjct: 16  gtcaaatga 8


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)