BAC Information

Click to search

BAC

Clone NameMSMg01-161M15
Chromosome1 (Build37)
Map Location 5,601,953 - 5,602,356
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC619596, EG619980, LOC100039121, LOC620009, Mrpl15, Lypla1, Tcea1, LOC619829, Rgs20, Atp6v1h, EG636659, Oprk1
Downstream geneNpbwr1, 4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161M15.T7 (MSMg01no161_m15.b1)MSMg01-161M15.TJ (MSMg01no161_m15.g1)
ACCAG361103AG361104
length1,1841,244
length of high quality
(start - end)
417 (28 - 444)389 (72 - 460)
definitionCHROMAT_FILE: MSMg01no161_m15.b1 PHD_FILE: MSMg01no161_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:48 2005CHROMAT_FILE: MSMg01no161_m15.g1 PHD_FILE: MSMg01no161_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGTCATTCGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCTT
GATTCCCAAACAAAACAAGAACTTCTTTTAAGAAGATGACCTTCCTTTTA
AACTAAACAGTGTTTTTCCAAAGCTATCTTCATTATGGTGTTCTGCCTTG
ATGAACACAGTGATCCAAGATGACCTTCACAAGGTCTGTGTCAATTCCAT
TTCCTTTATCTATGACAGTCTCCCTACAAACTTACTTTCAAATATAGAAA
TAGATGAGTCTTTGAGTAATGGTTTAAAACATATGTATCTGTGTGGAGTT
AGGTACACTGTAAAAATATCTTTTATTCTGATGTAATTGTCATCTCAGTG
GCTTATTGTCTTGGTCTGCTAACCTTGGCCTAGTTCTGGAAGCTTCTTTT
CTCTGTACAATTTTTATCCAGGCCTAGAATATTTTCAGCTTCCACTATTT
TTTCCCCCCCCCCCGTTTTGTTCTTTCAGAGCTAAAAAAGGATGGTTCAA
CTCAGTTGTGCTGGTTCCAATTCTTCTCCAAGTTGACTGATTCAATCTTG
CTTCTCTCAGCCTCAGTCTGAATTGGTCTGTTTGATCTCATATTCACTTT
GGCTATATGCCCTAATCTTCTGGCTCCTTCTTATTCTCTGGTGCATTTTG
TCTTCATCTGTGTCTAGCTTGTTCTCTCTCTGTAAATCTCTATAACTGTC
CTGGTAAAACTGCCTCCTTTCTCTGTACTGCTTCCCCAAGTAGCTTCCCT
TTTCTCTCTTTTCTCCCAAGAGTTGGGCATATTCATATTCTGTCAAATCT
TTCTCTGATTCCTCACTTTGTGTGCCCCTTAATTCATCAACCCTTTTTTT
AAAAAAAGGAAGGTTCCCTTCTTTAAAAAAAATTTATCTTCATTGTTTGG
GGATAAAAAAAACACCTAATGTCTGGATCCCCCCTTAAAAAAAACCCCTT
AATTTAATTAATTTTTTTCCCAAAAAAAAAAAACTTGTTATTTTCTCTTT
GTGGATATATAAATACTGTCCTGTGTTTATGTGTAAGTTAACTTCTTTTT
TGGAATAAAACAAAATATGTGTTAGTTCTTTCCCTTATATTTATTTAAAT
ATATTTTATAATACTTCTATTATTGGTGGGAACACTTTCATTCAATTTTT
TTTATAAAAATATAAATATATTTTTTATTTTTTA
NNAAAAGCAATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTGAAAATGAAGGCACACCATACCCAAA
TTTATGAGACACAATGAAAAGTGCAAAGAGGAAAGTTCATAGCACCAAGT
GCCTCCATAAAGAAATTAGAAAGTTCTCATACCAGCAATTTAAAAGTACA
TTGAAACCTCTACCAAGAAAAAAAAATCAAGCACACCAAAGAGGAGCAAA
AGGCAGGAAATAGTCAATATCAGGGGCTCAAATCACTCAGTTAGAAACAA
TGAAAACAAAACAAAGAATCAAGGAACCAAGAAGCAACTCTCGGAGAAAA
TCAACAAGATAGACAAACTGTTAGCCAAACTAACCAAGTGTCAGAGACAG
TATTCTATTTAACAAAATCAGTAATGAAAACATAGACATAACAACAGACA
CTGATGATTTTTTTCCCCCCCCCAGGTCTTANTTTAAAAGCTAGAAAAAA
AAAAATTGGAAAATCTTAATGAAATGGATGATTGATTTTCTAGACAGATA
CTACTTACCAAAGTTAAATCAAGATCAGGCAAACTATTTAAATAGCCATA
TAAACTTCAAAGAAACAGAGCAGTCATTAAAAGTCTCCCAACCAAAAAAG
TCCAGGCAAATATGGTTTTAGTGCAGAATTCTAACAGACTTTTGAGGAAG
CACTAATTTCAATACTCCTGCAACTATTCCACAAAATAGAAACAGATGGA
ACACTACCAAACTTATTACTTGAGGCCACAGTCACCCTGATACATAAACC
ATGCAAAGACTCAACAAAGAATGAGAAATTTAGACCAATTTCTCTTATGA
ACATTGATGCCAAAATAGTAAATAAAATACTCACCAAACAGATTCCGGAA
ACACTTTAAAGACATCATCAGTCAAGATCAAATAGGCTTCATCCCCGGGA
TGTGGGGATGGTTCAATATTTGAAAATCCCGCAATGGTATCCCCCCTAAA
AGGAATCCTTTAAAAAAACCAAAGGGTCCCTCCTTAAAGGTTGGAAAAAC
CTTTTGTAAAATCCTAACCCCCTTCAGGTTAAAGGGTGTTAAAAAAATAG
GGTGGCAGGGTCTTTTCTAAACTTATTCAAGGTAAATTTATGTAGGCCTA
TTCCTCTTCTCTCTAATATATGAAAAATTTAAGGTCTCTCCGTTAACTTA
GGAAGAGAAAAGCTCCCCCCCTTCTCTTCTTGAAAATAATATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_m15.b1 MSMg01no161_m15.b1 CHROMAT_FILE:
MSMg01no161_m15.b1 PHD_FILE: MSMg01no161_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:48 2005
         (417 letters)



>mm_chr1_5601738_5602556
          Length = 819

 Score =  719 bits (372), Expect = 0.0
 Identities = 396/408 (97%), Gaps = 10/408 (2%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattcttg-attcc-caaacaaaacaagaacttcttttaagaagatgaccttcctttta 73
           ||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattcttgtattccacaaacaaaataagaacttcttttaagaagatgaccttcctttta 275

                                                                       
Query: 74  aactaaacagtgtttttccaaagctatcttcattatggtgttctgccttgatgaacacag 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aactaaacagtgtttttccaaagctatcttcattatggtgttctgccttgatgaacacag 335

                                                                       
Query: 134 tgatccaagatgaccttcacaaggtctgtgtcaattccatttcctttatctatgacagtc 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgatccaagatgaccttcacaaggtctgtgtcaattccatttcctttatctatgacagtc 395

                                                                       
Query: 194 tccctacaaacttactttcaaatatagaaatagatgagtctttgagtaatggtttaaaac 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tccctacaaacttactttcaaatatagaaatagatgagtctttgagtaatggtttaaaac 455

                                                                       
Query: 254 atatgtatctgtgtggagttaggtacactgtaaaaatatcttttattctgatgtaattgt 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 atatgtatctgtgtggagttaggtacactgtaaaaatatcttttattctgatgtaattgt 515

                                                                       
Query: 314 catctcagtggcttattgtcttggtctgctaaccttggcctagttctggaagctt----c 369
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||    |
Sbjct: 516 catctcagtggcttattgtcttggtctgctaaccttggcctagttctggaagcttatagc 575

                                                           
Query: 370 ttttctctgtacaatttttatccaggcctagaatattttcagcttcca 417
               |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 576 ----ctctgtacaatttttatccaggcctagaatgttttcagcttcca 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 819
Length adjustment: 9
Effective length of query: 408
Effective length of database: 810
Effective search space:   330480
Effective search space used:   330480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)