Query= MSMg01no161_o07.b1 MSMg01no161_o07.b1 CHROMAT_FILE:
MSMg01no161_o07.b1 PHD_FILE: MSMg01no161_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:01 2005
(424 letters)
>mm_chr1_34585638_34586461
Length = 824
Score = 735 bits (380), Expect = 0.0
Identities = 401/408 (98%), Gaps = 1/408 (0%)
Strand = Plus / Plus
Query: 16 gaatt-agaaagcgggctggtgacatggctcagtggctaagaacacccgactgctcttcc 74
||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 215 gaattcagaaagcaggctggtgagatggctcagtggctaagaacacccgactgctcttcc 274
Query: 75 aaaggtccggagttcaaatcccagcaaccacatggtggctcgcaaccatctgtaacaaga 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaggtccggagttcaaatcccagcaaccacatggtggctcgcaaccatctgtaacaaga 334
Query: 135 tctgacgccctcttctggagtgtgtgaagacagctacagtgtacttacatacaataaata 194
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 335 tctgacgccctcttctggagtgtgtgaagatagctacagtgtacttacatataataaata 394
Query: 195 aataaatctttaaaaaaaacagaattcagaaagctttgccacaagaaatcaagcaaccta 254
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aataaatctttaaaaaaaaaagaattcagaaagctttgccacaagaaatcaagcaaccta 454
Query: 255 gaggataaatgggcgcaatgagcctacagttctcaaaagtggatgatcaaacagcagtga 314
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 455 gaggataaatgggcgcaatgagcctacagttctcaaaagtggatgatcaaatagcagtga 514
Query: 315 gtgtttgaatgcgtccaacattcttactgcaaattaagactgctctgagattccatctca 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gtgtttgaatgcgtccaacattcttactgcaaattaagactgctctgagattccatctca 574
Query: 375 cattagtctgtggtagcagacattaagaagacacatattttattactg 422
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cattagtctgtggtagcagacattaagaagacacatattttattactg 622
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space: 338225
Effective search space used: 338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no161_o07.g1 MSMg01no161_o07.g1 CHROMAT_FILE:
MSMg01no161_o07.g1 PHD_FILE: MSMg01no161_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:02 2005
(264 letters)
>mm_chr1_34782676_34783343
Length = 668
Score = 445 bits (230), Expect = e-129
Identities = 257/268 (95%), Gaps = 4/268 (1%)
Strand = Plus / Minus
Query: 1 attaaaggtgtgcaccaccactgcccaaaaaacactaatgaacaacctccagcctgtgtg 60
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 468 attaaaggtgtgcaccaccactgcccagaagacactaatgaacaacctccagcctgtgtg 409
Query: 61 tgccagcc----atgacactagcgagtcctgtgcctgaaattcattttatatttatgtgt 116
|||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 408 tgccagccatgaatgacactagcgagtcctgtgcctgagattcattttatatttgtgtgt 349
Query: 117 atgcacacatgcccatgcaggctccattggagggcagcaaagggctttggattcccccaa 176
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 348 atgcgcacatgcccatgcaggctccattggagggcagcagagggctttggattcccccag 289
Query: 177 aactagagttatgggtggttgtgaacctcctgaggtgggtacaagaactgaacattaatc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aactagagttatgggtggttgtgaacctcctgaggtgggtacaagaactgaacattaatc 229
Query: 237 ctacgcaagagcggcaagagctcttagc 264
||||||||||||||||||||||||||||
Sbjct: 228 ctacgcaagagcggcaagagctcttagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 668
Length adjustment: 9
Effective length of query: 255
Effective length of database: 659
Effective search space: 168045
Effective search space used: 168045
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
