BAC Information

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BAC

Clone NameMSMg01-161O14
Chromosome1 (Build37)
Map Location 181,311,926 - 181,312,295
singlet/doubletsinglet
Overlap geneSmyd3
Upstream geneEfcab2, D230039L06Rik, Kif26b, LOC666354
Downstream geneLOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190, Cdc42bpa, Cabc1, Psen2, EG277333, Itpkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161O14.T7 (MSMg01no161_o14.b1)MSMg01-161O14.TJ (MSMg01no161_o14.g1)
ACCAG361193AG361194
length1,1541,232
length of high quality
(start - end)
---381 (72 - 452)
definitionCHROMAT_FILE: MSMg01no161_o14.b1 PHD_FILE: MSMg01no161_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:04 2005CHROMAT_FILE: MSMg01no161_o14.g1 PHD_FILE: MSMg01no161_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGTCGGTCAGGCCGCCNGNNAGNNNNNGGNNNNNGNNNGNNNNNCTTTT
AGAAGGCCNNNANNGNNNNNNNNNNNGGNNNNNGAGNNNGANNNNGNNNN
NGANNNGANNNGNNNNNCCTCTTAAAAGAAAAAANAAAAANNAAANAAAN
AAANNNNAGGGNNAGAGNNNNAAGGANAAGGNNAAAGNANNAGAGGGAAN
GANAAGGGGNANANGGAGNAANAGNAANAAANAAGGNAAGAGGAGAAGGN
AGANNANNAGANNNATTTTTTGANANANAANGGAAGNAANAGANAGNNAN
AANAAGAAGAANNAAGNGAGAGGGNAAAGGGGNANATTTTTTTTTTTGAG
NNNAGGNANANAGAAANNANGGGGGGAAAAAAAACCCCCCTTTTTTTTTC
CCCCCCCCGNAANNGGANNNANNGAAAAAAAAAAAAAAGGGGGNGNNNGN
NNATNNANNNGNNAAANNGNNGGGNAGAAGGNAAAGAAAAAAAGAGGGAG
AAGAAGAAGGAGGAGAGGAAAAGANNAANACCGAANAAAGAAGGAGGAAA
AAAAAGAAAGGGGAGAGNAGANAAANAAAAAAAGAAAAAAAAGGGGAAAA
AGAGAGAAGAGGAAGAGAAAAAAGAAGAAAAGNAGAAAAAGAGGGAAANG
GAGGAAGAAAAGAAAAGAGGAGGGAAAGGAAAGAAAACCACCGGAGGGGA
AAAAAAGAAAGAATTTTTTTTTTTTTTTTGAAAGAAAAGAAGAGGAAAAA
GGAAAAAGAAGGGAGGGAAAAGAAAAGGAGAAGAAGGAAGAAGAGTTGCT
TTTTTTTTTTTTTTTTTCTAAGGGAGAAAGGAGAAAAGAGAATTTCTATT
GTTTACCACGGAACCCAGAAACATACTTACTACCCTGAGTGCAAGGTAAC
CAGGATAAGATTCACCACGGTCCGTGTGCTGTCAAAGCCAAAAAGATCAA
TAACCTTTCGAGGTGAGGAAGATCAACTATATAACTCCCATGGTGATGGA
GGAAGCCCTGCCAACCCAAAAAGAAATTAATAGGTTCATTGTACAAACAA
AGAATATTGATTGGCAAATCACTAAGGGAGATATCTACTTGGAATAAACC
ATAAGGATGATATAAACCTTGCGATCNTAAACACTAAGATTATCGAACTA
GTAT
NNNCCATCAAGGTAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXGAGTTGTGACTTCACTGGATCACTTAACA
CGTGGCAGCTCTTTGCTTGGCCAGAAGGAGAGCCTCTTGTCAAAGCAGAA
GCTCAAGCAGTGCCCTGTGCTGTGCGGGCTCCTGTTCTTGCCCCTGTAGC
ATCTTCCCACGTCCTTCATGAGGTTCAGTCCACATGCTGTCCGCTTTCCG
TGAAAACCCAGCACAACTTTCACCAATGTCTTGCTTCCGTCTTTCCTTCC
CTTCCCTATTCCCTAGACATCCTAAACCAAGTGAAGCATCAAGGGGGTTT
GTTGGCTTCAGAAAGTCTCCATTTCACATGGCCAAACCCAGGGCTTTTGA
TTTTGTCATTAGTATCTGGCCTCTCTCCTTTGGTGGACTGTGCTTTCATG
ATTTTTTTCCCCCCCCCCACAGCCTGCCTTCTTTGGTGAAAAAGGCGAGG
ACAAATCCAGGTCCAAATCCAACAGGATTTGGGGGAAAATCCACGTATAC
ATACATACATACATACATACATACATACATACATACATACATACATACAA
ACACACACACATACATATATACATACAAACACACATACATACATACACAC
ATACAAACACACATACATACAAACATACATACACACAAACATGCATACAT
ACAAACACACATACGTATATACACACATATATACATACAAACATACAACA
AACACACATGCATACATATACACATATATACATACTAACACACATGCATA
CATACATATATACACACATATATACATACAAACATACTTCCTTCATTCCC
CAAATTAGCTGTGAACATNGTTTGTGTCAGGGTGACTTTCTCGAACTAAT
CAATGGGTAAACAGTACTTTGATTGTTCGCTTTGAATGCATGTTCCTCTA
AGGGCTCTATCCCATGGTTTCCACACAGATTGTGAGAAATATTCGTAAAA
GGTTCCTCCGTGTTGGCCTTCCTCACACGCCTTGTTTCCCGGCCTTTTCC
TTTTTTAATTTCTCCAAAACCGGAGTCCCTATATTCTATTTATTGTCCCT
CTTTGTTTTTAAAGAGCCACCTTTTATTTCTCTGATTTTTCCGGAAATAT
TTCTTTTTTATGTATGCTGCTAATTATTTTTATATTTAGGTTAAATTCTC
TCATTANAATTTTTTTTTCAGATTCTCTGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_o14.g1 MSMg01no161_o14.g1 CHROMAT_FILE:
MSMg01no161_o14.g1 PHD_FILE: MSMg01no161_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:04 2005
         (381 letters)



>mm_chr1_181311726_181312496
          Length = 771

 Score =  596 bits (308), Expect = e-174
 Identities = 359/380 (94%), Gaps = 10/380 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagttgtgacttcactggatcacttaacacgtggcagctctttgcttggccagaaggaga 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 570 gagttgtgacttcactggatcacttaccacgtggcagctctttgcttggccagaaggaga 511

                                                                       
Query: 61  gcctcttgtcaaagcagaagctcaagcagtgccctgtgctgtgcgggctcctgttcttgc 120
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gc--cttgtcaaagcagaagctcaagcagtgccctgtgctgtgcgggctcctgttcttgc 453

                                                                       
Query: 121 ccctgtagcatcttcccacgtccttcatgaggttcagtccacatgctgtccgctttccgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 452 ccctgtagcatcttcccacgtccttcatgaggttcagtccacatgctgtccgctttctgt 393

                                                                       
Query: 181 gaaaacccagcacaactttcaccaatgtcttgcttccgtctttccttcccttccctattc 240
           |||||  |||||||||||||||| |||||||||||||||||||||||||||||||   ||
Sbjct: 392 gaaaatacagcacaactttcaccgatgtcttgcttccgtctttccttcccttccc---tc 336

                                                                       
Query: 241 cctagacatcctaaaccaagtgaagcatcaagggggtttgttggcttcagaaagtctcca 300
               | |||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 335 ----gccatcctaaaccaagtgaagcatgaagggggtttgttggcttcggaaagtctcca 280

                                                                       
Query: 301 tttcacatggccaaacccagggcttttgattttgtcattagtatctggcctctctccttt 360
           |||||||||||||||||||||||||||||   ||||||||||||||||||||||| ||||
Sbjct: 279 tttcacatggccaaacccagggcttttgacagtgtcattagtatctggcctctct-cttt 221

                               
Query: 361 ggtggactgtgctttcatga 380
           ||||||||||||||||||||
Sbjct: 220 ggtggactgtgctttcatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 771
Length adjustment: 9
Effective length of query: 372
Effective length of database: 762
Effective search space:   283464
Effective search space used:   283464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)