BAC Information

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BAC

Clone NameMSMg01-162L20
Chromosome1 (Build37)
Map Location 144,429,407 - 144,429,680
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639376
Downstream geneLOC545369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162L20.T7 (MSMg01no162_l20.b1)MSMg01-162L20.TJ (MSMg01no162_l20.g1)
ACCAG361769AG361770
length713714
length of high quality
(start - end)
278 (44 - 321)288 (74 - 361)
definitionCHROMAT_FILE: MSMg01no162_l20.b1 PHD_FILE: MSMg01no162_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:11 2005CHROMAT_FILE: MSMg01no162_l20.g1 PHD_FILE: MSMg01no162_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATCAGTGTCTCCAGATCATTAGAGTATATGATTTTGTAACTGTATCA
CTGGTGACTTAATGATATTGTTAAGTTCATACACCTGTATCATGATATCA
TAATAATGTTCCTGTTTTTATTGATAAATACATTTTTTATAACAGTACTT
AGGAACAGTTATAATGTCACGAATAGCTGTTGTAGCTTTCTTATGCTCAT
ATCTTATTGCGGGATATTTTATCTATTTATTTTATAAAAGACTATAGTGC
ACTTAAATATAAATTATCATATTCATAAGCATAAAGCCTGTCCCGCACTG
CAATAGGTCCTGGATAACTACCNTAACGGANCCGATAGTAATGGTCCCTG
AATTGTTTTTATGTGTGCAGGCTCCAAACAAAACCTAATGACGAAATGGG
ATACAGGATGGTTGACACAGCTCTAGGCTCTAGTGTATCCCAAATCGCTA
AAACTGAGAGTTTAGAATGTCCTGCCAAAGATCATAACATTAGGCTTCTC
CACACATTTCCAGATACTAGGCATGTTGTTTTGAATATAAAATGTACCCA
ACTCCCAACACCAGCAAACCTGACTCTGTAAACAGTAGACTTTATAGACT
CAACGCACGAAGAAAGTCTCATAAGTCCAGGTATAAGGCCCATTGCATAG
ATATACATACGCT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATAGCCTCAGCAATAGCGTCAGGCCT
TGGGAACCTCCATTGAGCTGGATCCCACTTTGGGCCTGTCACTGGACCTT
CTTTTCTTCAGGCTTCTCTCCATTTCCATCCCTGCAATTCTTTAAAAGAG
AAACAATTATGGGTCAGAGGTGTGACTGTGGGATGGCAACCCCATTCCTC
ACTTGATGTCCTGTCTTCCTGGTAGAGGTGGACTCTATAAGTTCCCTCTT
CCTACTGTTGGGCAATTTCATCAATTTCCCTGTGAATCTTGGGAGTCTCC
CACCTTCCAGGTCTTTTGTGCGCCCCCCCCCCCCCCCCCCAACCTCCTAT
TTCTTGAGGTTGCCTGTTCTTAACATATAGAATATGAGATTATTACTTAG
CCTATAAAATTCAAAAATAGTGGTTTCTTTGCTGAAATATGGCCAGCCAC
CTGTGGTCTTTGCTTTGTGACATAGTAGGGACTCCCAAATCAGTCCTTCA
TTCTTGTTGCTTGAATTTGGTCACATAGTTTGACCAAATGGGAAAGTACA
CATGTGACTATCTCAATCTAAACTAGACCAAGCACATGTTTTCAACCTGC
TTATTTCCTCCTATTCATGAGAATAACATTTTTTTCCACTTTGCCAGTCT
GTATTTTGGAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_l20.b1 MSMg01no162_l20.b1 CHROMAT_FILE:
MSMg01no162_l20.b1 PHD_FILE: MSMg01no162_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:11 2005
         (278 letters)



>mm_chr1_144429203_144429880
          Length = 678

 Score =  514 bits (266), Expect = e-150
 Identities = 272/274 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcagtgtctccagatcattagagtatatgattttgtaactgtatcactggtga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcagtgtctccagatcattagagtatatgattttgtaactgtatcactggtga 264

                                                                       
Query: 65  cttaatgatattgttaagttcatacacctgtatcatgatatcataataatgttcctgttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttaatgatattgttaagttcatacacctgtatcatgatatcataataatgttcctgttt 324

                                                                       
Query: 125 ttattgataaatacattttttataacagtacttaggaacagttataatgtcacgaatagc 184
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttattgataagtacattttttataacagtacttaggaacagttataatgtcacgaatagc 384

                                                                       
Query: 185 tgttgtagctttcttatgctcatatcttattgcgggatattttatctatttattttataa 244
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 385 tgttgtagctttcttatgctcatatcttattgtgggatattttatctatttattttataa 444

                                             
Query: 245 aagactatagtgcacttaaatataaattatcata 278
           ||||||||||||||||||||||||||||||||||
Sbjct: 445 aagactatagtgcacttaaatataaattatcata 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)