BAC Information

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BAC

Clone NameMSMg01-162M17
Chromosome1 (Build37)
Map Location 159,814,767 - 159,949,756
singlet/doubletdoublet
Overlap genenone
Upstream geneRalgps2, 4930439D14Rik, 1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
Downstream gene6430517E21Rik, Astn1, Pappa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162M17.T7 (MSMg01no162_m17.b1)MSMg01-162M17.TJ (MSMg01no162_m17.g1)
ACCAG361808AG361809
length681684
length of high quality
(start - end)
305 (48 - 352)277 (78 - 354)
definitionCHROMAT_FILE: MSMg01no162_m17.b1 PHD_FILE: MSMg01no162_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:15 2005CHROMAT_FILE: MSMg01no162_m17.g1 PHD_FILE: MSMg01no162_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(159,949,455 - 159,949,756)(159,814,767 - 159,815,042)
sequence
CCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTACGGACTTATTTTTAAACCTTGTCTTTCTTAATCATTGACAC
CATATTGGCTTCTTTGGCCACCTCATCTATATTGTGACTTTATTTACCAC
CTTTTTGCAGTTTCCCCTCACATTCCTATCTGACATGGACCTCCTATGAT
TTGCTGAAATAAATCTGACAATTCCTCTTGGGCACCATAAATAAACATCA
GCCCAGCCTTTCCATTACCCAGTATGGCCCTCACTATGCTCTCTTCCAGG
GAAAAGCGCTACCTTGTACAGCGATCTAAACGCAGACTCCTTAGCATTCT
CTCTCCTTTTTTGCCCNTACTGTCCACCCAACTGCAACTCCGGCCGGCTG
ACAAACTTTTTGACTATATCTAATTTTCTTCATCTCCCTGTTTGTCATGC
TAGTATAAAACATTATCATGTCCCCTTCCAAAATCCTCTTAACTCGTCTT
GCTCCCCTCCTGCCCCCTGCCATTCACCATCACCCTTCTTTCTCTGATCC
ATTGTACTCCCCAACACCTGAAGCAATCATAAGAAGCAAAAATGTTAATC
TTGTTATTGTCACCCACTTACAACTTCTCTCTTTTTTATTATCGTTTTCT
ACATCCTGNGTGCAGTTTCCTCCCCTCCTCT
ATCGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCCATTTTCAAGTGTTTGG
CTTCTCTCCAGTACTTGGTCTTCCCACCCTTTTGACTGGCAGGTGGCAAC
TGCATTACAAATAGAAAAACTGAGCTATGCAGAACTGAAAAGCACTACAT
TAATAGCAACTGAGAAATCATCACTTCCTGATGCAGTTTCCTGTTAAATT
TACCACCTTAGCAACAGGAGCAAACTGGGCAAGATATAAAATCATAATTT
AGAAAAACCCACTATATAACTGGGGATGCAAAGAAACCCTAATGAGTTAT
AGTTTAGGTAAGTTACNATGACGNAGNGCGCATTACTGGAACAACAGCAG
GTAAGAGAAGAATCCAACAAATAAAAACAAATAACAAGGTAAAGTGCCTC
AAACTTGTAATAACCACATAGGGGCTGGTATGATGGTATCCTTGGTTATA
AAACATGTCAGTAATACCTGCCAACTCTCTCTTTAACACATGGAGAGCAT
CTTAGTTACTTTTCTATTGCTGTGACAAGACACCATTTCCAAGGCAACTT
AAAGAAGAAAGATTTTAATTTGGAGTTTATGGTTCCAGAGGATGAGTCCA
TGACCATCATGACAGGGAGCATGCCAGCAGGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_m17.b1 MSMg01no162_m17.b1 CHROMAT_FILE:
MSMg01no162_m17.b1 PHD_FILE: MSMg01no162_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:15 2005
         (305 letters)



>mm_chr1_159949252_159949956
          Length = 705

 Score =  522 bits (270), Expect = e-153
 Identities = 294/302 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctacggacttatttttaaaccttgtctttcttaatcattgacaccatattggct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggaattctacggacttatttttaaaccttgtctttcttaatcattgacaccatattggct 446

                                                                       
Query: 64  tctttggccacctcatctatattgtgactttatttaccacctttttgcagtttcccctca 123
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctttggcaatctcatctatattgtgactttatttaccacctttttgcagtttcccctca 386

                                                                       
Query: 124 cattcctatctgacatggacctcctatgatttgctgaaataaatctgacaattcctcttg 183
           |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catttctatctgacacggacctcctatgatttgctgaaataaatctgacaattcctcttg 326

                                                                       
Query: 184 ggcaccataaataaacatcagcccagcctttccattacccagtatggccctcactatgct 243
           ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 325 ggcaccataaataaacatcagcccagcctttgcactacccagtatggccctcactatgct 266

                                                                       
Query: 244 ctcttccagggaaaagcgctaccttgtacagcgatctaaacgcagactccttagcattct 303
           ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 265 ctcttccagggaaaagcgctaccatggacagcgatctaaacgcagactccttagcattct 206

             
Query: 304 ct 305
           ||
Sbjct: 205 ct 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no162_m17.g1 MSMg01no162_m17.g1 CHROMAT_FILE:
MSMg01no162_m17.g1 PHD_FILE: MSMg01no162_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:15 2005
         (277 letters)



>mm_chr1_159814567_159815243
          Length = 677

 Score =  518 bits (268), Expect = e-151
 Identities = 274/276 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttccccattttcaagtgtttggcttctctccagtacttggtcttcccacccttttgact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttccccattttcaagtgtttggcttctctccagtacttggtcttcccacccttttgact 260

                                                                       
Query: 61  ggcaggtggcaactgcattacaaatagaaaaactgagctatgcagaactgaaaagcacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaggtggcaactgcattacaaatagaaaaactgagctatgcagaactgaaaagcacta 320

                                                                       
Query: 121 cattaatagcaactgagaaatcatcacttcctgatgcagtttcctgttaaatttaccacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattaatagcaactgagaaatcatcacttcctgatgcagtttcctgttaaatttaccacc 380

                                                                       
Query: 181 ttagcaacaggagcaaactgggcaagatataaaatcataatttagaaaaacccactatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 381 ttagcaacaggagcaaactgggcaagatataaaatcataatttagaaaaacccactagag 440

                                               
Query: 241 aactggggatgcaaagaaaccctaatgagttatagt 276
           ||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactggggatgcaaagaaaccctaatgagttatagt 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)