BAC Information

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BAC

Clone NameMSMg01-163B20
Chromosome1 (Build37)
Map Location 77,950,654 - 77,950,934
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
Downstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163B20.T7 (MSMg01no163_b20.b1)MSMg01-163B20.TJ (MSMg01no163_b20.g1)
ACCAG362025AG362026
length736738
length of high quality
(start - end)
314 (48 - 361)295 (78 - 372)
definitionCHROMAT_FILE: MSMg01no163_b20.b1 PHD_FILE: MSMg01no163_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:38 2005CHROMAT_FILE: MSMg01no163_b20.g1 PHD_FILE: MSMg01no163_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTGTTTAGCTCTGTACCCCATTTTTAATGGGGTTATTTAGAA
TACCCAAGATACAATTTGCAAAACACAAGAAAATTAAGAAGAATGAAGAC
CAAAGTGTGGATACTTTGCCCCTTCTTAGAATTGGGAACAAAACACCCAT
GGAATGAGTTATAGAGACAAAGTTTGGAGCTAAAACGAAAAGATGGACCA
TCTAGAGACTACCCCACCTGGGGATGCATCCTATAATCAGCCTCCAAACG
CAGACACCATCGCATACACCATCAAGATTTTGCTGAAAGGACCCTGATAT
AGCTGTCTTGAATGAGGCTATGCCAGCGCCTGGCAAATACAGAAGTGGAT
GCTCACAGTCAGCTACACGATGGAATACAGGGCCCTCAATGGAGGAGCTA
GAGAAAGTACCCAAAGAGCTGAAGGGGTCTGAGCCCTATAGGTAGAACAA
CAATATGAACTAACCAGTACCCCCCAGAGCTCATGTCTCTAGCTATATAT
GTAGCAGAAGATGGCCTAGTCAGCCATCATTGGGAAGAGAGGCCCCTTGG
TCTTGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAGAAG
TGGGAGTGTGTGGGTAGCGGAGCATGTATCTTTATCTCATCTACACCACC
AAATTTTCGTTCTTTCCTAAGGTTGCATCCATGATT
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATCATCCAAATAAACCAACTAC
GTCCCCTTCCCCTTTGACCTTACCTATAAATTTGTTGGCCATAGTTTTAT
CCATGATATACATAAAATTTTCATGGAAAGTGCTATGTGTATTTCTTTAC
TAGTTTTGATAAATATAAGTACTTGAACATTCATCTTGAGTTTTGTGGCA
ATCATATTTTCAAGGGAGGCTTCACAAAACATGTTTAGTTTTTGTATGAC
ATATTGACTGAGAATGGACATATAATACTGCACCCCAGTCAGGAGAACTT
TAGCTTGATGTATTTTTTCCCCCCCCCCGATAATTTTGGTGATAAACTGT
TGGCATCCATGGGCACAAATCAGGAATGCTGTTTAGCACTATTACTGCAC
AGAAAAATGTCAACCTTCTACAAATGATGAGTCCAGGAAGGCTTCAGGGT
TGCAAGCCTCAGACCTACACAGTCTCACTTGCCCTCCCCTATATGACGTT
GATGGGATATGGCCAAGAGGTGTTAGGTGATGTGACCTGGCAATTCTCTA
CCTTCATGTTTTTGTGTCTCTGTCAACCCATGCTTAACCTATTTTTACCA
CCAAAAATAAAATGGAAGGTGCTGGGAAATCTCCTTTTGTTCAGCACATA
GTCCCTGTACATGTTTAGGATGGTACTGTTGGGTGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_b20.g1 MSMg01no163_b20.g1 CHROMAT_FILE:
MSMg01no163_b20.g1 PHD_FILE: MSMg01no163_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:38 2005
         (295 letters)



>mm_chr1_77950454_77951148
          Length = 695

 Score =  536 bits (277), Expect = e-157
 Identities = 280/281 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatcatccaaataaaccaactacgtccccttcccctttgaccttacctataaatttgttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tatcatccaaataaaccaactacgtccccttcccctttgaccttacctataaatttgttg 422

                                                                       
Query: 61  gccatagttttatccatgatatacataaaattttcatggaaagtgctatgtgtatttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gccatagttttatccatgatatacataaaattttcatggaaagtgctatgtgtatttctt 362

                                                                       
Query: 121 tactagttttgataaatataagtacttgaacattcatcttgagttttgtggcaatcatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tactagttttgataaatataagtacttgaacattcatcttgagttttgtggcaatcatat 302

                                                                       
Query: 181 tttcaagggaggcttcacaaaacatgtttagtttttgtatgacatattgactgagaatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttcaagggaggcttcacaaaacatgtttagtttttgtatgacatattgactgagaatgg 242

                                                    
Query: 241 acatataatactgcaccccagtcaggagaactttagcttga 281
           ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 241 acatagaatactgcaccccagtcaggagaactttagcttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)