BAC Information

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BAC

Clone NameMSMg01-163K09
Chromosome1 (Build37)
Map Location 89,096,731 - 89,252,656
singlet/doubletdoublet
Overlap geneChrng, Eif4e2, Efhd1, Tnrc15, LOC100040600
Upstream geneArmc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd
Downstream geneLOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163K09.T7 (MSMg01no163_k09.b1)MSMg01-163K09.TJ (MSMg01no163_k09.g1)
ACCAG362384AG362385
length757725
length of high quality
(start - end)
313 (46 - 358)284 (74 - 357)
definitionCHROMAT_FILE: MSMg01no163_k09.b1 PHD_FILE: MSMg01no163_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:17 2005CHROMAT_FILE: MSMg01no163_k09.g1 PHD_FILE: MSMg01no163_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,096,731 - 89,097,040)(89,252,373 - 89,252,656)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAGGGTCGTGCATGTGACGAAAGCCTTCCCATCAGTTAGCTGCA
CCCCAGCCCTTAGCTTCAGTCTCTTATGCACACAGTGAGACTGCTCACAG
GTTATCGCTAACATTGAATTTGTTCACTGGGGTTAAGACCTCTGTGTTCT
AGAAACTTAGGGTGTAACTCTAATTTTTCTCAAATCCTACTTTTTTTGTA
AAGATTTATTTTATGTATGTGAGTACACGGTAGCTGTCTTCAGACACACC
AGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGT
AGCTAGGAATTTATTTCCCCACCCTCCCCAGAGCAGTCAGTGCTCTTAAC
CACTCAGCCATCTCTCCACCCCTCAAATCCTATTTTTAATGACGGTTCTT
AAACACTTTAAACTCCCTTGTAGCCCACAACCCACCAGAGGTAGTGAGAA
AAAAAGGAGACAGTGGCCTGTAGGGCTGGGGGTTTTATTCAAATATTTTT
ATTTTTACCCCTTTTCTTCTCCTCCGCTTATTTTCCTCCACCCCATATTC
TTATCTATATTTTTCCCCAACATAGCACATCCTTTTTTTTTATATTCCCG
CATTTTATTTTTTAATATCTCTTTATATTTTTTATTGTTAAAAAAATCAA
GTGCCTCCCTACTCTTATAATCCCCTCCCACCCCACTTTTTTTCTCTCCT
TCTTTTC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCGTTTTGGCTAAATTTTCTGGTGC
TTTTCCACTACATATTATTATCAAGTGCTTTAAGAAGAAAACTCTTTAAA
ATTACTTAACAATTTTAATCATGGTTTTACAAAGAAAAACGTATAGGATA
TATAAATACAAAAGAAAATGATGGCAGAACAGCTGTACAAACCATGGTTT
ACAAAGTGAACTATGTGCATTTAAATCCACCTGGTTAAAGGAGTTACTAA
GATATGAATAAAGACTGAGCTATTTTATTGTTAAAATGTTTCTATAATAC
TAATAGCTTAGAATAGCCTNTANATCCCCAACCTGGATAATTGGTTAAAT
GATAGTACATTCATACCCCGAAAAAAATAAAAAAAACCAAAAGCCGTTTA
TTAAGTTTTTTCTTTACTTAGTTTTTTTAAAGGTTACAAGATTTAATGCA
CAGTATGATCAGATTTTGTGAAAATAAAATATACATATATACAAACAAGA
TACATAAAACCACTTGGAAAGATATACCAAGATATGTACAGTGTGTACTA
GGGATCAAATTACCTAATAGTATCTTTTCCTTGCTTACTTATAACTTCTG
ATTTTTCTAGAAACTAAGTGATTTAATAATTAGACAAGCATTTTTTAAAT
ATAAAATAACTGAAACAGGCGCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_k09.b1 MSMg01no163_k09.b1 CHROMAT_FILE:
MSMg01no163_k09.b1 PHD_FILE: MSMg01no163_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:17 2005
         (313 letters)



>mm_chr1_89096528_89097240
          Length = 713

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacagggtcgtgcatgtgacgaaagccttcccatcagttagctgcaccccagcc 63
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 204 ggaattcacagggtcgtgcatgtgacgaaagccttcccgtcagttagctgcaccccagcc 263

                                                                       
Query: 64  cttagcttcagtctcttatgcacacagtgagactgctcacaggttatcgctaacattgaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttagcttcagtctcttatgcacacagtgagactgctcacaggttatcgctaacattgaa 323

                                                                       
Query: 124 tttgttcactggggttaagacctctgtgttctagaaacttagggtgtaactctaattttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttgttcactggggttaagacctctgtgttctagaaacttagggtgtaactctaattttt 383

                                                                       
Query: 184 ctcaaatcctactttttttgtaaagatttattttatgtatgtgagtacacggtagctgtc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctcaaatcctactttttttgtaaagatttattttatgtatgtgagtacacggtagctgtc 443

                                                                       
Query: 244 ttcagacacaccagaagagggcatcagatcccattacagatggttgtgagccaccatgtg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttcagacacaccagaagagggcatcagatcccattacagatggttgtgagccaccatgtg 503

                     
Query: 304 gtagctagga 313
           ||||||||||
Sbjct: 504 gtagctagga 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no163_k09.g1 MSMg01no163_k09.g1 CHROMAT_FILE:
MSMg01no163_k09.g1 PHD_FILE: MSMg01no163_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:17 2005
         (284 letters)



>mm_chr1_89252173_89252856
          Length = 684

 Score =  511 bits (264), Expect = e-149
 Identities = 279/284 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcgttttggctaaattttctggtgcttttccactacatattattatcaagtgctttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tttcgttttggctaaattttctggtgcttttccactacatattattatcaagtgctttaa 425

                                                                       
Query: 61  gaagaaaactctttaaaattacttaacaattttaatcatggttttacaaagaaaaacgta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 424 gaagaaaactctttaaaattacttaacaattttaatcatggttttacaaagaaaaatgta 365

                                                                       
Query: 121 taggatatataaatacaaaagaaaatgatggcagaacagctgtacaaaccatggtttaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 taggatatataaatacaaaagaaaatgatggcagaacagctgtacaaaccatggtttaca 305

                                                                       
Query: 181 aagtgaactatgtgcatttaaatccacctggttaaaggagttactaagatatgaataaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aagtgaactatgtgcatttaaatccacctggttaaaggagttactaagatatgaataaag 245

                                                       
Query: 241 actgagctattttattgttaaaatgtttctataatactaatagc 284
           ||||||||||   | |||||||||||||||||||||||||||||
Sbjct: 244 actgagctatacgaatgttaaaatgtttctataatactaatagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)