BAC Information

Click to search

BAC

Clone NameMSMg01-163L05
Chromosome1 (Build37)
Map Location 194,850,383 - 194,850,658
singlet/doubletsinglet
Overlap geneSyt14
Upstream geneTraf5, LOC100042625, Rcor3, Kcnh1, Hhat, A730013G03Rik, Sertad4, LOC100039677
Downstream geneAA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g, LOC667208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163L05.T7 (MSMg01no163_l05.b1)MSMg01-163L05.TJ (MSMg01no163_l05.g1)
ACCAG362421AG362422
length741731
length of high quality
(start - end)
316 (52 - 367)285 (81 - 365)
definitionCHROMAT_FILE: MSMg01no163_l05.b1 PHD_FILE: MSMg01no163_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:21 2005CHROMAT_FILE: MSMg01no163_l05.g1 PHD_FILE: MSMg01no163_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGTCGGAAAGAGAATTGGGGGCTAGAGAGATGGCTCACT
GGTTAAGAGCATTGGCTGTTCTTCCAGAGGTCCTGAGTTCAATTCCCAGC
AACCAAATGAGGGCTCACAACCATCTGTAATGGGATCTAATGCACTCTTC
TGGTGTTACTTATATACATATAATAAATAAATCTTTAAAAAAGAAAGAAA
AGAAGGAAAGAGAGAAAGACAGACAGAGAGAGAGAGAGAGAGAGAGAGAA
TGAACTGATGACACCTTGCTATGCTCTCCCCAGTGCAGAGAACTGCATTC
AGAATAGACATCCTCTTTGAGAACCCCCTCCCTTTTTTGCAAAAGCTACA
TCACAGTCAAGAAGCACTGAGGCACAGCCAGGAGCCATTTCCCAGAGTAA
GAGGGGCCATCCCCCTCTACAGCCCTACATCACAGTGGGGTAGTTCCTTT
TGTTGTTGGTGGTGGTGGATTTTTTTTCTTTCTTTTTTTTTTTCCTTGAG
ATATGTTTTTCTCAGTGTGATCATGGCTGACCTGTTTCTTACCTCTGTAA
CCATGCTGACCCCAAATTCTTAAATCCCCCTGCATCTGACACCAAAGATT
TCTTGCTTAAATGGATTGTGCTCACGTTGGCCCAGCTGAATACTTACTCT
TCTTACCCCTTACCCTTCCTTCATAATTAAAACGTTGTGCG
NTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACATATCAGAGTGATATGG
CTAATTTACACATTTAAAAACCACTCATGCTTAGTATAAGAACGTAAGCA
TTTAAGTGAGAAAAACAAAACCTAGTGTCCTAAACAAAAGAAAATATTCA
AGTCTACAATGACAGCAACAAAACAGGGGGAAAAGATGGATTCAAAACAC
TACAAGTACAACTGACAACTACATATTACAAGTGGGAGAGAAGAGACTAA
TAGAAATACAGGAAGATTCTTAAATTGGGACCTCAGCAACTAGGTGAACA
GGGTTACTTATTATTTGATATGACCCCCCCCGCCTCATTGGAAGGTGAAG
GTCACTTAAGAAATTACCACATGTCTTTAAAATGAGTCAGTCTGCTATTC
TATAGCTATCCAAATAAAAAGACTGAGATGTGAGATAAAAGAACAAGGAC
TTAAAGGCCATCCACACTGGCTTTATTCAAGGAGCATTTGAAACAGGAAA
ACAAGATTTTAAAAAAAAGCCAGTAGAAGGGAAAGAAGGTGAGGTGAATT
AGTCAGGGGCTACACCCTCAGATGTTCTGTGCTGCAGAGAGAGAGAGAGT
AGCCAACAAAAGACAGAATGCACACATGAGAAGAAAGCTCAGGGCTGAGC
AGAGCATGGTAGCACATTCCTGAAATCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_l05.g1 MSMg01no163_l05.g1 CHROMAT_FILE:
MSMg01no163_l05.g1 PHD_FILE: MSMg01no163_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:21 2005
         (285 letters)



>mm_chr1_194850176_194850860
          Length = 685

 Score =  391 bits (202), Expect = e-113
 Identities = 257/298 (86%), Gaps = 37/298 (12%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacatatcagagtgatatggctaatttacacatttaaaaaccactcatgcttagtataag 60
           ||||||||||||     |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 cacatatcagag-----tggctaatttacacatttaaaaaccactcatgcttagtataag 262

                                                                       
Query: 61  aacgtaagcatttaagtgagaaaaacaaaac---------------ctagtgtcctaaac 105
           || ||||||||||||||||||||||||||||               ||||||||||||||
Sbjct: 263 aaagtaagcatttaagtgagaaaaacaaaacaaaacaaaacaaaatctagtgtcctaaac 322

                                                                       
Query: 106 aaaagaaaatattcaagtctacaatgacagcaacaaaacagggggaaaagatggattcaa 165
           ||||||||||||||||| ||                 ||||| |||||||||||||||||
Sbjct: 323 aaaagaaaatattcaaggct-----------------acaggaggaaaagatggattcaa 365

                                                                       
Query: 166 aacactacaagtacaactgacaactacatattacaagtgggagagaagagactaatagaa 225
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aacactacaagtacaactgacaactacatattacaagtgggagagaagagactaatagaa 425

                                                                     
Query: 226 atacaggaagattcttaaattgggacctcagcaactaggtgaacagggttacttatta 283
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 426 atacaggaagattcttaaattgggacctcagcaactaggtgaacagtgttacttatta 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)