Query= MSMg01no164_d18.b1 MSMg01no164_d18.b1 CHROMAT_FILE:
MSMg01no164_d18.b1 PHD_FILE: MSMg01no164_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:01 2005
(317 letters)
>mm_chr1_83543089_83543805
Length = 717
Score = 582 bits (301), Expect = e-171
Identities = 312/319 (97%), Gaps = 6/319 (1%)
Strand = Plus / Plus
Query: 5 gaattccattttaacataaagaaataaaactgacacaaactattgtgacatttattgtag 64
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 gaattccattttaacataaagaaataaaactgacacaaactattgtgacgtttattgtag 264
Query: 65 caaacattcagtattggaaatttccatctatattttataaattgatgcaattaagcattg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaacattcagtattggaaatttccatctatattttataaattgatgcaattaagcattg 324
Query: 125 gtggccaatgtagagtctgaggcaaggacatccttatgttggaagtccaaacactggatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtggccaatgtagagtctgaggcaaggacatccttatgttggaagtccaaacactggatt 384
Query: 185 gcagttttcttaccttagcagtgtttatcatcatcaccatcaccatcaccatcaccatca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcagttttcttaccttagcagtgtttatcatcatcaccatcaccatcaccatcaccatca 444
Query: 245 cca------acaccaacaacatcaccaccatcatcattattgttattagtcttggaaata 298
||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccatcaccaacaccaacaacatcaccaccatcatcattattgttattagtcttggaaata 504
Query: 299 gtccaggttcttgcacatg 317
|||||||||||||||||||
Sbjct: 505 gtccaggttcttgcacatg 523
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no164_d18.g1 MSMg01no164_d18.g1 CHROMAT_FILE:
MSMg01no164_d18.g1 PHD_FILE: MSMg01no164_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:02 2005
(589 letters)
>mm_chr1_83679369_83680357
Length = 989
Score = 1089 bits (563), Expect = 0.0
Identities = 575/579 (99%)
Strand = Plus / Minus
Query: 11 acaccaatcaactcaatgtcaagtgtgtgttctataattcaattaaaatttgacactatc 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 acaccaatcaactcaatgtcaagtgtgtgttctataattcaattaaaatttgacactatc 930
Query: 71 tggatggtgttgacataagattttgcaacttaccaactcagttcaccagactaccagcat 130
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 929 tggatggtgttgacataagattttgcaacttatcaactcagttcaccagactaccagcat 870
Query: 131 tagaaatgcaattgaaaatccagggctttgtgtgtgtgtgcatgcatgtttgcatgcatg 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 tagaaatgcaattgaaaatccagggctttgtgtgtgtgtgcatgcatgtttgcatgcatg 810
Query: 191 tgcatgtgtgtgtgtttgtgggccaaaagtcaatgttaagagcctcctattccccgtact 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 tgcatgtgtgtgtgtttgtgggccaaaagtcaatgttaagagcctcctattccccgtact 750
Query: 251 cctgactgatgagatttacagatacctgctgctatacccagctttttatgtgagtgctgt 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 cctgactgatgagatttacagatacctgctgctatacccagctttttatgtgagtgctgt 690
Query: 311 gaatctgaactcatttctcagggcttttgtgatacccacctcttcagagttgatagttct 370
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 689 gaatctgaactcatttctcagggcttttgtgataactacctcttcagagttgatagttct 630
Query: 371 acaagataactcacaaaattcagagaaatgggggtcttacaattatttgcttcttataaa 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 acaagataactcacaaaattcagagaaatgggggtcttacaattatttgcttcttataaa 570
Query: 431 ggttgcgactctgattcaatcaaatgcaagcgacatatagagcaatacaggtgaaatata 490
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 569 ggttgcgactctgattcaatcaaatgcatgcgacatatagagcaatacaggtgaaatata 510
Query: 491 tagcaatataggtgcatataggtgataaagcatggggcttccatgctctgttagtgagct 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tagcaatataggtgcatataggtgataaagcatggggcttccatgctctgttagtgagct 450
Query: 551 actctgcagaacttgatgcgttcactaccaaagaagatc 589
|||||||||||||||||||||||||||||||||||||||
Sbjct: 449 actctgcagaacttgatgcgttcactaccaaagaagatc 411
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
