BAC Information

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BAC

Clone NameMSMg01-164I05
Chromosome1 (Build37)
Map Location 82,342,942 - 82,343,249
singlet/doubletsinglet
Overlap geneRhbdd1
Upstream geneEG621020, LOC433328, EG665145, Irs1
Downstream geneCol4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164I05.T7 (MSMg01no164_i05.b1)MSMg01-164I05.TJ (MSMg01no164_i05.g1)
ACCAG362966AG362967
length799742
length of high quality
(start - end)
310 (44 - 353)39 (321 - 359)
definitionCHROMAT_FILE: MSMg01no164_i05.b1 PHD_FILE: MSMg01no164_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:23 2005CHROMAT_FILE: MSMg01no164_i05.g1 PHD_FILE: MSMg01no164_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTTATCTTTTTTACTAATAGATTTTTTGACACATTGTTCAATAGAA
TTCAGCTTTTGTATCATGTTAAGGCCATAGCTTTTTTAAAAAACAAAACC
AAAAACACCTTATGAGTTAAAGTATACCACAGAAGCCCATGTAAAAAAAT
GTAGCTTCCCTATCCCAGCCACCAATGGTGTCAATAAGCAGGTTTCTGAG
CCCTTAACTTTAGGTGCAGTCTCAGGTTTTCATGCTGTGTCTACAGACAC
TGTTGATAGAGGTGCCTTGTGTTTTGTCCTTCTGGACTCCTGACCTACAG
AACCTGTGTTTTTTATGACCCCCCCCCCCCCCCCTATTATGTTGTTTTGA
GTTATTTAATATATCTCCCCCCTTTTAAAAAATTCAAAATTTTTTTTTTT
TGTCCCCTCACTTCTTCTCCTCATTATCCCTTACTAATCATTTCATTATA
TCATATACTCTTTTCTTTATCCCTCTTTAAATAAATTAATAACGCATTTC
CCATCTATATTAACAGTCCCTATCATCACACAAAATTTATAATTAATAAC
TACTATATTACTCCACACTAATTTTTTTATAGCTATTTTCAAAAAAAATA
ACATCATATTATAATATAATTATAATTCTTTTATACATATTTATCTTTTA
TCAAATCTTTTATATTCCTTCCTTTTTTTAATTATCCGCTTATTATCTTA
ACTTAATATTATTTTCCAAAATACAATAATAGCTCGAAACCGCCTTTTA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTTCTGTTTGTTTTAAATCTGGGGATCAAG
CTCAGGTTTGCCAAACAAGCATTCTGCCTCCAAGTTTCTGCCTTAATCTT
TGTGCAGCTATTCAGTCTATTTCCACTTGACTCATTAACTGATCTAAGTT
AGGGTGGAGCTGAAATCCACACAGACTGGATGTGTAGGAAGCCACAGCTG
CCTGAAAAAGCTAAGCAAATGAGTCAAGGAAACAGTTGATATGATGTGCC
AGGAAGCCACTGAATATCTCTCCCCTCCCCCCAAAAACCAAGTCAAGCCT
TTTTTATGATTTTTTTCACCCCCGCCCACCTCTTACACCCCTTCACTGAG
CTTGTTAATATGACGACGCCAAAAATTCAGAGAAAATGCAAGCAAGTTAA
GGGGGGTAAAAAATTAACTGGGATTTTAAGTTGTCCTATAGGAAAACTTA
TATTGGAATTCATTGAGTTATTTCACTTACTGCCTAATAATGTTCTAAAC
AGTAGGGGCATAGTGGGGAAATGCCTTTATAGGAAAGATCTTTAGGCAGG
CAGGTTTCTGAACTCCAAAGCAGCCTAATCTAATTAGCCAATTCCGGGTT
AGCCCCGGCTACTTTTTGATACCTTGTCTCATAAGTCAGCCCGTTAGCCA
ATGCACCCGCCAAACAAAATGGGAAACGTTTCCCTCAAGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_i05.b1 MSMg01no164_i05.b1 CHROMAT_FILE:
MSMg01no164_i05.b1 PHD_FILE: MSMg01no164_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:23 2005
         (310 letters)



>mm_chr1_82342738_82343449
          Length = 712

 Score =  528 bits (273), Expect = e-154
 Identities = 300/309 (97%), Gaps = 4/309 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttatcttttttactaatagatttttt-gacacattgttcaatagaattcagc 63
           |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 205 gaattctcttatcttttttactaatagatttttttgacacattattcaatagaattcagc 264

                                                                       
Query: 64  ttttgtatcatgttaaggccatagcttttttaaaaaacaaaaccaaaaacaccttatgag 123
           |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 265 ttttgtattatgttaaggccatagcttttttaaaaaacaaaaccaaaaacatcttatgag 324

                                                                       
Query: 124 ttaaagtataccacagaagcccatgtaaaaaaa-tgtagcttccctatcccagccaccaa 182
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 325 ttaaagtataccacagaagcccatgtaaaaaaaatgtagcttccctatcccagccaccaa 384

                                                                       
Query: 183 tggtgtcaataagcaggtttctgagcccttaactttaggtgcagtctcaggttttcatgc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggtgtcaataagcaggtttctgagcccttaactttaggtgcagtctcaggttttcatgc 444

                                                                       
Query: 243 tgtgtctacagacactgttgatagaggtgccttg-tgttttgtccttctggactcctgac 301
           |||| ||||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct: 445 tgtggctacagacactgttgatagaggtgccttggtggtt-gtccttctggactcctgac 503

                    
Query: 302 ctacagaac 310
           |||||||||
Sbjct: 504 ctacagaac 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 712
Length adjustment: 9
Effective length of query: 301
Effective length of database: 703
Effective search space:   211603
Effective search space used:   211603
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)