BAC Information

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BAC

Clone NameMSMg01-164J16
Chromosome1 (Build37)
Map Location 69,041,205 - 69,183,570
singlet/doubletdoublet
Overlap geneErbb4, LOC667842
Upstream genenone
Downstream geneEG241084, Ikzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164J16.T7 (MSMg01no164_j16.b1)MSMg01-164J16.TJ (MSMg01no164_j16.g1)
ACCAG363029AG363030
length709739
length of high quality
(start - end)		238 (47 - 284)606 (77 - 682)
definitionCHROMAT_FILE: MSMg01no164_j16.b1 PHD_FILE: MSMg01no164_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:30 2005CHROMAT_FILE: MSMg01no164_j16.g1 PHD_FILE: MSMg01no164_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,183,337 - 69,183,570)(69,041,205 - 69,041,810)
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTTGGAGGTTCCTTGGGACAGTGTATGGCTGGCACTTGGTTGT
GTTTTAGCAGTATATAAAGTATGTCACTGTATCTGTTTCTTCATTTGTAG
GAACACTGGCTGGGCAAAGTCACACAGGAGAAAATGTTAACTATAGTACA
TTTGCTCAACACGGAAATGGGACAGACAAATTTCTTAGACTTCATCTTAC
ATTAAACTCTTAATTGTGTTTCTTTAATCATGTATAAAAGGAAATTTATT
TCTTACCCTTTATTCAAAAATGGGACAGTTGAAAAAGTTTAACTTACCTT
GGGGGGAAAGGGAACCCCAAAAATATTTTTTTTTTAACACCCCCCCCAAA
CCCCTTTTTTTTCTTTTTTTAGAGGGGTTAATAAAAAGGTTGTTCTTTCC
CCCCCCCCCAAAAAAAAAAAAAAAAAAAAGGTTTTAACCTTTCCTTTTCG
AGCCCCCCCCATTTTTTGTTTGCGGGGGGCATTTCAAAAAACCCCAAAAA
AAAAACAATGGGTTTTTTTCTTCCCTGGGGTCCCCTTCTCCCTTCCCTTT
TTTTTTTGCCCTCCCCCCTTCTCCGAACAAATCTCTTCCTTTCTCTTTAA
TCCCCCCTCTTACCAAAACTTAATTTTTCCCCTCTTCCGTTTGCCGCAAA
TATCACATT

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAACTTTCAAAGGAAAACCCA
ACACCACATAGTTTGAACTGATGAACACCAGAAATCTATATTATCAAAGA
ATGAAAAGAGTTAACAATTAAATACAATAGATTGGCATTTATCCTAATTC
TGTTTGCTATCTTAAGCTTAGCATTTTGTCCCACAGTATATCCTATTTTA
TTTTTGGAGCTACAAAATAGGAGTCTCTGAAATTTCATTCTATCTACTCA
TGTATCTTTGACTGTAGATGACATTTGGGGGAGTTTTGCCTTCAAATACA
TGTTAGAAGAAGTATCTTAGGTCCTGGTAATTTAATGTACAAAGAGGAAC
TCTCTGTAAGTCTAAAGGAAACCACAAAAATAGGTTCTCTTTAGATGGAA
AATATGACCACAGATCTGGAACGAGCATGCCCACTCACTCTGAGAAGATG
AAATGACCAATTTCTTGGTGAAAATAGGAGCTGAACATATGGCTAAAAGC
TGTATTAGAGAGCAAATTACTACTACTTACGTGCTGTTACAAATTGCAGA
TAAAAGATGATTATACATATTAGAGTTATCTAGTTTTCATTATAAGGACT
AAATGATTTAAGATTATAGAAAAGCCGGGCTGAATGAAGAGTACAGGACA
GGCCCATTAATGAAGCATTTACCTTTGCTGCTACTGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_j16.b1 MSMg01no164_j16.b1 CHROMAT_FILE:
MSMg01no164_j16.b1 PHD_FILE: MSMg01no164_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:30 2005
         (238 letters)



>mm_chr1_69183133_69183770
          Length = 638

 Score =  429 bits (222), Expect = e-125
 Identities = 231/234 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttggaggttccttgggacagtgtatggctggcacttggttgtgttttagcag 64
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gaattcacttggagggtctttgggacagtgtatggctggcacttggttgtgttttagcag 379

                                                                       
Query: 65  tatataaagtatgtcactgtatctgtttcttcatttgtaggaacactggctgggcaaagt 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tatataaagtatgtcagtgtatctgtttcttcatttgtaggaacactggctgggcaaagt 319

                                                                       
Query: 125 cacacaggagaaaatgttaactatagtacatttgctcaacacggaaatgggacagacaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cacacaggagaaaatgttaactatagtacatttgctcaacacggaaatgggacagacaaa 259

                                                                 
Query: 185 tttcttagacttcatcttacattaaactcttaattgtgtttctttaatcatgta 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tttcttagacttcatcttacattaaactcttaattgtgtttctttaatcatgta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no164_j16.g1 MSMg01no164_j16.g1 CHROMAT_FILE:
MSMg01no164_j16.g1 PHD_FILE: MSMg01no164_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:30 2005
         (606 letters)



>mm_chr1_69041005_69042010
          Length = 1006

 Score = 1164 bits (602), Expect = 0.0
 Identities = 605/606 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaaactttcaaaggaaaacccaacaccacatagtttgaactgatgaacaccagaaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaaactttcaaaggaaaacccaacaccacatagtttgaactgatgaacaccagaaatc 260

                                                                       
Query: 61  tatattatcaaagaatgaaaagagttaacaattaaatacaatagattggcatttatccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatattatcaaagaatgaaaagagttaacaattaaatacaatagattggcatttatccta 320

                                                                       
Query: 121 attctgtttgctatcttaagcttagcattttgtcccacagtatatcctattttatttttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attctgtttgctatcttaagcttagcattttgtcccacagtatatcctattttatttttg 380

                                                                       
Query: 181 gagctacaaaataggagtctctgaaatttcattctatctactcatgtatctttgactgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagctacaaaataggagtctctgaaatttcattctatctactcatgtatctttgactgta 440

                                                                       
Query: 241 gatgacatttgggggagttttgccttcaaatacatgttagaagaagtatcttaggtcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgacatttgggggagttttgccttcaaatacatgttagaagaagtatcttaggtcctg 500

                                                                       
Query: 301 gtaatttaatgtacaaagaggaactctctgtaagtctaaaggaaaccacaaaaataggtt 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 gtaatttaatgtacaaagaggaactctctgtaagtctaaaggaaactacaaaaataggtt 560

                                                                       
Query: 361 ctctttagatggaaaatatgaccacagatctggaacgagcatgcccactcactctgagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctttagatggaaaatatgaccacagatctggaacgagcatgcccactcactctgagaa 620

                                                                       
Query: 421 gatgaaatgaccaatttcttggtgaaaataggagctgaacatatggctaaaagctgtatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatgaaatgaccaatttcttggtgaaaataggagctgaacatatggctaaaagctgtatt 680

                                                                       
Query: 481 agagagcaaattactactacttacgtgctgttacaaattgcagataaaagatgattatac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agagagcaaattactactacttacgtgctgttacaaattgcagataaaagatgattatac 740

                                                                       
Query: 541 atattagagttatctagttttcattataaggactaaatgatttaagattatagaaaagcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atattagagttatctagttttcattataaggactaaatgatttaagattatagaaaagcc 800

                 
Query: 601 gggctg 606
           ||||||
Sbjct: 801 gggctg 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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