BAC Information

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BAC

Clone NameMSMg01-164K10
Chromosome1 (Build37)
Map Location 174,315,471 - 174,469,812
singlet/doubletdoublet
Overlap geneLOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19
Upstream genePvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm
Downstream geneEG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164K10.T7 (MSMg01no164_k10.b1)MSMg01-164K10.TJ (MSMg01no164_k10.g1)
ACCAG363061AG363062
length753754
length of high quality
(start - end)
315 (39 - 353)314 (68 - 381)
definitionCHROMAT_FILE: MSMg01no164_k10.b1 PHD_FILE: MSMg01no164_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:34 2005CHROMAT_FILE: MSMg01no164_k10.g1 PHD_FILE: MSMg01no164_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,315,471 - 174,315,781)(174,469,499 - 174,469,812)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
AATGTCACACAGTCTCAGAAACTGTCTGCAGCTGACAAAACCATGCCTCT
ACACGAGGCAAATCATAGCTGCTGGAGTCAGAAGCAGCCCCAGATCCTTA
CACCTGGGATTAAAACAAGCACATGCGTATGCTGTTTCTGTATCTTAAAG
AATCCCAAATTGTCACTACATCCTCTTGCACCTAGTTACATCTTTGTTAC
TGTTCTTTCCCTCCATTCACCCAGTCTATGAAGTCAAATCAGTGAATTAG
ATCTGATCTTAGCTCATTGTTTACCAAGCTACAGGTAGTATGTGGTTATA
ATTCTTTTTTATTTATCCCCCCCCCCCCCGGTGTGTGTGTGTGTGTGTCT
GATTAACCTCCCCCCGTGCGAAAAAAAATATTCTTTATTCGCTGGGTCCA
TTTTTTAATTCTTTGTAAATTGTGCTTTAATCTAATAAATTTGATCTTCG
ATCTCTGCGGATAATTTTTAAAACCCTACTTTGACTTTGAATCTAATAAT
ATAAACTTGAATCTCTTTGTTGCCGCACTTCTCTTTGTTTACTATTATTT
AACTTTACATTTAATAATGCCTTTTTTTATTGATTCCCCCCCCTTAACTA
TTACTTTTTTATTTTTTTTTTCTTTCCTTTACTATACATTTTTTAACATC
TTTCTTATAACAATTTCTTATAATTGTTTTTTTATCTACTTATTATTTAA
TAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTACCTCATCTCCCCCTCTCTCTCTCCCTCCCT
CCCCTTGGATCTCCCCCCACCCCTTTTGTCCTCAGAGCCTCCTTTTTCTC
CCTCTCTGCTGCCTCTCTCAATGCCCTCCCTCATGGCTTGTTTGCTGCCT
CTACTCCTCTGGACCTGCCAGGTACCCCCTCACCCTACTATATTTCATAA
CACTGGTTCCTCTGCCTCATCTTGCCCTGGATAGCAGGAAAGAAAATTCT
AGATGCTTCCACAACCACTCTCTGCCTTTAGTCCTGAAGGGGCAGAGCTG
AGAGGATCAGCACACTGCCTAAAAATGCAGCATAAGAGAAGTAGGCTAAT
TTATCTGCCACCAGGAGCTCCAAATCTACAGAAGAGACTGGATCCATGTG
CACATGAATCATTCCCCTGCCACTCGAGTATTTCTGTGTTTTTAAAATAA
TTCCATGTTCACTCTAAACTATACTTAAAAGTCTTTATTTTTTTTTCTCT
CCTTCATCATCTACTCCCTATATACCCCAATCACCCCATCACTCATTTTT
GACACTTATTGATTCCCCACTTTTAGGAGCTTTATTCCTCCCAAGCTGTT
TTGTTCACATTGCTTTTCTCTTCTATTTCCTTCTTATTACAGTCATTCTT
ACTTGACGTTTCTCTAATAACCTATTCTGTTTTGTTCTATATAAGACATT
TTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_k10.b1 MSMg01no164_k10.b1 CHROMAT_FILE:
MSMg01no164_k10.b1 PHD_FILE: MSMg01no164_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:34 2005
         (315 letters)



>mm_chr1_174315267_174315981
          Length = 715

 Score =  578 bits (299), Expect = e-169
 Identities = 308/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaatgtcacacagtctcagaaactgtctgcagctgacaaaaccatgcctctac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaatgtcacacagtctcagaaactgtctgcagctgacaaaaccatgcctctac 264

                                                                       
Query: 65  acgaggcaaatcatagctgctggagtcagaagcagccccagatccttacacctgggatta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acgaggcaaatcatagctgctggagtcagaagcagccccagatccttacacctgggatta 324

                                                                       
Query: 125 aaacaagcacatgcgtatgctgtttctgtatcttaaagaatcccaaattgtcactacatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaacaagcacatgcgtatgctgtttctgtatcttaaagaatcccaaattgtcactacatc 384

                                                                       
Query: 185 ctcttgcacctagttacatctttgttactgttctttccctccattcacccagtctatgaa 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 385 ctcttgcacctagttacatctttgttactgttctttccctccattcacccagcctatgaa 444

                                                                       
Query: 245 gtcaaatcagtgaattagatctgatcttagctcattgtttaccaagctacaggtagtatg 304
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 445 gtcaaatcagtgaattagatctgatcttagctcattgtaaaccaagctacaggtagtatg 504

                      
Query: 305 tggttataatt 315
           |||||||||||
Sbjct: 505 tggttataatt 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no164_k10.g1 MSMg01no164_k10.g1 CHROMAT_FILE:
MSMg01no164_k10.g1 PHD_FILE: MSMg01no164_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:34 2005
         (314 letters)



>mm_chr1_174469184_174469897
          Length = 714

 Score =  607 bits (314), Expect = e-178
 Identities = 314/314 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctacctcatctccccctctctctctccctccctccccttggatctccccccacccctttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ctacctcatctccccctctctctctccctccctccccttggatctccccccacccctttt 570

                                                                       
Query: 61  gtcctcagagcctcctttttctccctctctgctgcctctctcaatgccctccctcatggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gtcctcagagcctcctttttctccctctctgctgcctctctcaatgccctccctcatggc 510

                                                                       
Query: 121 ttgtttgctgcctctactcctctggacctgccaggtaccccctcaccctactatatttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttgtttgctgcctctactcctctggacctgccaggtaccccctcaccctactatatttca 450

                                                                       
Query: 181 taacactggttcctctgcctcatcttgccctggatagcaggaaagaaaattctagatgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 taacactggttcctctgcctcatcttgccctggatagcaggaaagaaaattctagatgct 390

                                                                       
Query: 241 tccacaaccactctctgcctttagtcctgaaggggcagagctgagaggatcagcacactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tccacaaccactctctgcctttagtcctgaaggggcagagctgagaggatcagcacactg 330

                         
Query: 301 cctaaaaatgcagc 314
           ||||||||||||||
Sbjct: 329 cctaaaaatgcagc 316


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)