BAC Information

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BAC

Clone NameMSMg01-164K18
Chromosome1 (Build37)
Map Location 178,254,561 - 178,254,869
singlet/doubletsinglet
Overlap genenone
Upstream geneRgs7, Fh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, Pld5, B020018G12Rik
Downstream geneCep170, Sdccag8, LOC666235, Akt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164K18.T7 (MSMg01no164_k18.b1)MSMg01-164K18.TJ (MSMg01no164_k18.g1)
ACCAG363076AG363077
length745828
length of high quality
(start - end)
313 (43 - 355)34 (84 - 117)
definitionCHROMAT_FILE: MSMg01no164_k18.b1 PHD_FILE: MSMg01no164_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:35 2005CHROMAT_FILE: MSMg01no164_k18.g1 PHD_FILE: MSMg01no164_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAATTAGTAACTGAATTATCAATATAATTTTCCTCTACTGATACTCTC
CTCAACACACCATCCTACACATAATCAGATGTCCATTTATTGTGCTTCAC
TTCCTTTGCCTTAACTGGAAGTCCAGAACTCTTGTCAGATAGATACTAGA
TGATTGCATTTATAAGTAAACATGGATGGAAGACACTTATGAGTAGGACC
ATATTGTGGGTTGCTTTCTTCCTCAGAGTGGAGGTGCATTTTGGCAAGTT
TGATTTAAGATGTTCACATGTCTCAGCAGACTTTAATTCTGGATGTGGAT
GGCTGTGTTTTTTTTACCCCCCCCCCCCATGGGATTCAGGGGAAAATTTT
ATTACTGAACCCCCTGTTTCAAATATGTTGATCACATGGGACTGAAGATG
AATGCAAATTTGGACTTAGATGTGCTAATGTCACTTGAATTGCTGTCAGT
CCTTCCTTCTTCAGCTGGACTCTCATCCTCTGCTTTTGTCGAAAACTGGT
GCATACTGTAGTTTACTTAGCATAACTGTCCCTCTAAGCCTCTCGTGTCT
AATCTTTGTTTCTTCATGATGTTGTTACTGTTCTTTGATGCATATTTTCC
GGTATCTTCTCTATTCTACAGTCCTTGGGTTTTTGTTCGCTAATTATCAC
TTTCACATACTTCTCTTTCTCTATCCCGCGTCTCTTTCTTCTCTC
TACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCCACACAGAGAAACC
CTGTCTTGAAAAAAGTATGCCTGGGGGATGGGGAGAAGGATTCCCCCCCC
TTTCCTCTTTCTTCTCTCCTTTTCCCCTCCCCTCTCCCTTCTCCCTTCTT
CCCTCTTTCTCTCTTCCCCCCCTTCCACATCTTTCCTCCTTCTTCTCTTT
TTTCCCTTTTTTTTTTTTCTTTTCTTTTCTCCCCTCTCTCTTCTTCTCCC
CCTCTCCTTTTTCCCCCTCCCTCCTTTTTTTTTTTCCCCTCCCTCTTTCC
TCTCCCTTCTCTCCCTTCTTTTCTCCCCCCCCCTCCCCCCCTCCTTTTCC
TTTTTCTTTTCCTTTCTCTCTAGCCCCCCCCCCCTCCCCCTTCCTCCTTT
CTTTTATTACTTCCTTCTTCTCCTTTTTTTTTTTTTCCTCCCTTCTCCTC
CTCCTTCCTCCTCTTCCTTCCTCTTCTTTCTTTTTTCTCCCTTTCTTCTT
TCTCCTTCCTTTTTTTTTCTTTCTTTCACCCCTTTCCCTCTCCCTTTTCC
TCCCTCCTCTTCTCCCTCTCCCTTTTCCTCTCTTTTTTCCCTCTTTTCTC
CCCTCTTTTTCTTTCCTTCCTCTTTTCTCTTCCCCCCTCTTTTCTCTCCT
TCTCTCCTTTTCTCTCCTTCCCACTTTTCCCCTCTTTCTTTTTCCTTCCT
CCCCTCTCCTTTCTCCCCTTCTCTCCCTCTCCTTTCCTTTTTCCTCCCTT
TCTTTCCTTTTTTTTTCCCTTTCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_k18.b1 MSMg01no164_k18.b1 CHROMAT_FILE:
MSMg01no164_k18.b1 PHD_FILE: MSMg01no164_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:35 2005
         (313 letters)



>mm_chr1_178254358_178255069
          Length = 712

 Score =  522 bits (270), Expect = e-152
 Identities = 300/310 (96%), Gaps = 1/310 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaaattagtaactgaattatcaatataattttcctctactgatactctcctcaa 63
           |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 512 ggaattcaaattagtaactgaattattaatataa-tttcctctactgatactctcctcaa 454

                                                                       
Query: 64  cacaccatcctacacataatcagatgtccatttattgtgcttcacttcctttgccttaac 123
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 453 cacaccatcctacacataatcagatgtccatttattgtacttcacttcctttgccttaac 394

                                                                       
Query: 124 tggaagtccagaactcttgtcagatagatactagatgattgcatttataagtaaacatgg 183
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 393 tggaagtccagaactcttgtcagatagatactagataattgcatttataagtaaacatgg 334

                                                                       
Query: 184 atggaagacacttatgagtaggaccatattgtgggttgctttcttcctcagagtggaggt 243
           ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 333 atggaagacacttctgagtaggaccatattgtgggttgctttattcctcagagtggaggt 274

                                                                       
Query: 244 gcattttggcaagtttgatttaagatgttcacatgtctcagcagactttaattctggatg 303
           ||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||| ||
Sbjct: 273 gcattttggcaagttagatttaagatgttcaaatgtctcagcagacttaaattctggctg 214

                     
Query: 304 tggatggctg 313
           ||||||||||
Sbjct: 213 tggatggctg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 712
Length adjustment: 9
Effective length of query: 304
Effective length of database: 703
Effective search space:   213712
Effective search space used:   213712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)