BAC Information

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BAC

Clone NameMSMg01-164M06
Chromosome1 (Build37)
Map Location 95,141,030 - 95,302,394
singlet/doubletdoublet
Overlap geneSned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g
Upstream geneLOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik
Downstream geneHdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164M06.T7 (MSMg01no164_m06.b1)MSMg01-164M06.TJ (MSMg01no164_m06.g1)
ACCAG363134AG363135
length748761
length of high quality
(start - end)		276 (42 - 317)391 (72 - 462)
definitionCHROMAT_FILE: MSMg01no164_m06.b1 PHD_FILE: MSMg01no164_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:42 2005CHROMAT_FILE: MSMg01no164_m06.g1 PHD_FILE: MSMg01no164_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,302,122 - 95,302,394)(95,141,030 - 95,141,403)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTGCCTGCTCCTACACCTTGGCCCAACCTCACAGTCCAGTCAGTATCTG
CCCATAGCTGTTGCTGAGACAGCTCTGTTTGGGGAGCAGCATGGTCTTTA
CAGACCCTGCAACATTCCTACGACATGCTCCCAGCACCCACGCTGAGGTC
GGGTCTGGGGCAGGTCCCTATTGTGAGCTGTGACAAGCTAAGAAGGAAGG
GGGTGGAGGGAGATGAGCAAGGATAATTTAGTAGGAAAAGCTACTACACC
CCTATGTGATAGAAGATACTGTTAGAGGGACTAGAAGACTGAGAAGGCTG
GTACCCTTTTTTTCCCTCCCCCCCCCCCCACCCTGCAGCTAGACACACAC
CTCCAAAATGGCTCACCCCCAGCAAAAAAGACGATCCTATATTATCATGG
ATAAGACCCTGTTGTCCAGTAAGAAAGTCACTGGGAGTCTGTGGGTCACT
CCTGACTTAGTTGCCCTAGGGGTAAGGCATTCTTCAGCACAGGTCACCCT
GTGTTTGTTTTCAGCAGTGTGTTTACATGAGATTCCTTTAGTCAAAGCAA
GTTCTGGTCTCTGTTCTGGCGACTTTGTTATTTTTAAGGTAGATCCCGTG
TAATGTATTTTCTTGTTAACGTGGCTACTTACTTTAGTTGACTTTATCCG
TTGCTGTTGGTTTAATTAACAGCAATCTCTGCTCAATTATAGTTTTTT

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGGCATGGGTATATATGCATAATGAATGT
ACATACACATTTACAGTCATGTCAGTAATAGTCCCCTGGGGTGATAATAG
AGCTGAAAATCCCTATCACCCAGGAACATCAGGATGTCTTCATGCAACAC
ATTACTGGTGTGCTTGTGGTAATGAAAATCTTCTACATTGCTGGCCAAGC
AAGTTAGGCTGCCTGGCCAGCAAGCCCCCAGGAATCTGGTCTCTACCTCC
CAATGCTAGGGTGACAAGCATGACATCACACCTGGCTTTTTAATATGGGT
TCTGAGGATAGAACTCACGTCCATGTGCTTTTGAGGCAACACTGAGCCAT
CTTCCCAGCCTGACATGTGTGTGCGTGTGTGTGTGCGTGTTGTGCGTGTG
TGTGCGTGTGTGCGTGTGTGTGTGTGTGAGTGTGTGCGTGTATTTCTTTA
CTAAGTAGGCTAAGTTATTAGCTCATCCAGCCTTCCATAATTACCCACCC
ATTGTATACTGCCATTGCCCAGCCCCCTTGCCTTAGTAATTCAAAGCATG
CTTAGTGTCTTCTGAATTTTCTGCCACCCTGTTTCTTTATTTCTCTTATT
TTTCATGGTCTTCTATCATAACTCCTTGATTTTAAAACCTTCCACTCCTA
AACCCCATCCCCATTTCTATTGTTCCTCCCTGTATTCTTCATTACAAGTT
TTGTTTATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_m06.b1 MSMg01no164_m06.b1 CHROMAT_FILE:
MSMg01no164_m06.b1 PHD_FILE: MSMg01no164_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:42 2005
         (276 letters)



>mm_chr1_95301919_95302594
          Length = 676

 Score =  528 bits (273), Expect = e-154
 Identities = 273/273 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttgcctgctcctacaccttggcccaacctcacagtccagtcagtatctgccca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ggaattcttgcctgctcctacaccttggcccaacctcacagtccagtcagtatctgccca 417

                                                                       
Query: 64  tagctgttgctgagacagctctgtttggggagcagcatggtctttacagaccctgcaaca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tagctgttgctgagacagctctgtttggggagcagcatggtctttacagaccctgcaaca 357

                                                                       
Query: 124 ttcctacgacatgctcccagcacccacgctgaggtcgggtctggggcaggtccctattgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ttcctacgacatgctcccagcacccacgctgaggtcgggtctggggcaggtccctattgt 297

                                                                       
Query: 184 gagctgtgacaagctaagaaggaagggggtggagggagatgagcaaggataatttagtag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gagctgtgacaagctaagaaggaagggggtggagggagatgagcaaggataatttagtag 237

                                            
Query: 244 gaaaagctactacacccctatgtgatagaagat 276
           |||||||||||||||||||||||||||||||||
Sbjct: 236 gaaaagctactacacccctatgtgatagaagat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no164_m06.g1 MSMg01no164_m06.g1 CHROMAT_FILE:
MSMg01no164_m06.g1 PHD_FILE: MSMg01no164_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:43 2005
         (391 letters)



>mm_chr1_95140830_95141620
          Length = 791

 Score =  685 bits (354), Expect = 0.0
 Identities = 369/374 (98%), Gaps = 1/374 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggcatgggtatatatgcataatgaatgtacatacacatttacagtcatgtcagtaatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggcatgggtatatatgcataatgaatgtacatacacatttacagtcatgtcagtaatag 260

                                                                       
Query: 61  tcccctggggtgataatagagctgaaaatccctatcacccaggaacatcaggatgtcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccctggggtgataatagagctgaaaatccctatcacccaggaacatcaggatgtcttc 320

                                                                       
Query: 121 atgcaacacattactggtgtgcttgtggtaatgaaaatcttctacattgctggccaagca 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 atgcaacacattactggtgtgcttgtggtgatgaaaatcttctacattgctggccaagca 380

                                                                       
Query: 181 agttaggctgcctggccagcaagcccccaggaatctggtctctacctcccaatgctaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttaggctgcctggccagcaagcccccaggaatctggtctctacctcccaatgctaggg 440

                                                                       
Query: 241 tgacaagcatgacatcacacctggctttttaatatgggttctgaggatagaactcacgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgacaagcatgacatcacacctggctttttaatatgggttctgaggatagaactcacgtc 500

                                                                       
Query: 301 catgtgcttttgaggcaacactgagccatcttcccagcctgacatgtgtgtgcgtgtgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 501 catgtgcttttgaggcaacactgagccatcttcccagcctgacatatgtgtgtgtgtgtg 560

                         
Query: 361 tgtgcgtgt-tgtg 373
           |||| |||| ||||
Sbjct: 561 tgtgtgtgtgtgtg 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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