BAC Information

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BAC

Clone NameMSMg01-164P19
Chromosome1 (Build37)
Map Location 65,710,203 - 65,710,518
singlet/doubletsinglet
Overlap genenone
Upstream geneCcnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
Downstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164P19.T7 (MSMg01no164_p19.b1)MSMg01-164P19.TJ (MSMg01no164_p19.g1)
ACCAG363282AG363283
length728724
length of high quality
(start - end)
320 (47 - 366)280 (434 - 713)
definitionCHROMAT_FILE: MSMg01no164_p19.b1 PHD_FILE: MSMg01no164_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:59 2005CHROMAT_FILE: MSMg01no164_p19.g1 PHD_FILE: MSMg01no164_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTCATGTTGTAATGTCTCCCAACCATAAAATTATTTTTATTGCT
ATTTCGTTACTAATTTTGCTACTCTTATATATCATAATGTAAGTATCTGT
CTTTTCTTATGGTCTTATGTGACCCTGTGAAAGGGTCACAACCTACAGGT
TGAGAACTACTGTTATAGATAGACCACTCCATCAATCATCCTCAAATAGT
TATAGGCATCTCATAGACAATGAGGTAACTGGATCACCTTGTAGCAAGTC
TGGGTTTTCCTTGCAGAACCAGAACTGAGACATGATCAACTATATCGCAA
ATTAACCAAGACTGTTTGGTTATACCTACCCCTCTTCACTCCTACCAAAT
TATTTCTCTGTTTAAACCTAAATCTTATGTTAATTAACGCAGTAAAGATG
TCTGAAATGCTTAGTCAGTATTTTTTTAATTACCATATTGACTAAAGTAA
TTCCCTGCTTTTTTACCATTACAAAAACAAAACAGCAAAAATCAAAAATA
AACAAAGGCCCATAAAAAATCATATGTATAGAGTCATTGTAGATTATATT
TCATGACATTTTCATTCAAGTACATTATGTACTTTGATCAAATTTACTCT
CATTCCTATCTCCAATCTACACCTCCACAATCCTACAAGCCCCATTTTTC
TTTGTGTTGTCTACATGCCTGAAAACAT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACGCAGTTGAATCCTTCTCAACAGTCTG
TTTTACGGGAACCTTTATTACCCCGACCCGCAGTTCTGGTTCCAGAATGA
GGAATCTTCCTTGCGCCGGTGATGGTAACCGTTCCAGGTTTTCTTGTCCT
GGGTCCTCTCGTCCCAGGTCTCAGCACCAACTCTTCCCGGGTTTCGGCAC
CAACTCTTACCCGCGTTCTCGCCACCGGCCAGGAAGAACGCAACAAACCG
GAATCTTCTGCGGCAAAATTTTATTGCTTACATCTTCAGGAGCAAGAGAG
CAAGAGATTAGAATAGATCCGNANACGAAAGCAAGAGAGAGAAAAAGAAC
AAGAACAGGAAAGCAAGAGAGAGAAAAAGATAAAAAAACCCCGTCCCTTT
TAAGGAGAATTATCCTCCGCCTAGGACGTATTACTCCCTGATTGGCTGCA
GCCCATCGGCCCAGTTGTCATCATGAGAAAGGCAGAACACATGGCGGGAA
AACTGCCCCTGCACGTGTGCAGATTATGTTTACTACTTAGAACACAGCTG
TCAGCGCCATCTTATAATGGCAAATGTGAGGGCGGCTCCTCACACTCAAA
GATTAAGTGAATCTTCTCCCACTAAGGCCCGACCAGGCAGTCCTCTGCTA
TACTTGTGCCTTGTGCCTTGTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_p19.b1 MSMg01no164_p19.b1 CHROMAT_FILE:
MSMg01no164_p19.b1 PHD_FILE: MSMg01no164_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:59 2005
         (320 letters)



>mm_chr1_65709999_65710718
          Length = 720

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcatgttgtaatgtctcccaaccataaaattatttttattgctatttcgttac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcatgttgtaatgtctcccaaccataaaattatttttattgctatttcgttac 264

                                                                       
Query: 65  taattttgctactcttatatatcataatgtaagtatctgtcttttcttatggtcttatgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taattttgctactcttatatatcataatgtaagtatctgtcttttcttatggtcttatgt 324

                                                                       
Query: 125 gaccctgtgaaagggtcacaacctacaggttgagaactactgttatagatagaccactcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaccctgtgaaagggtcacaacctacaggttgagaactactgttatagatagaccactcc 384

                                                                       
Query: 185 atcaatcatcctcaaatagttataggcatctcatagacaatgaggtaactggatcacctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcaatcatcctcaaatagttataggcatctcatagacaatgaggtaactggatcacctt 444

                                                                       
Query: 245 gtagcaagtctgggttttccttgcagaaccagaactgagacatgatcaactatatcgcaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtagcaagtctgggttttccttgcagaaccagaactgagacatgatcaactatatcgcaa 504

                           
Query: 305 attaaccaagactgtt 320
           ||||||||||||||||
Sbjct: 505 attaaccaagactgtt 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)