BAC Information

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BAC

Clone NameMSMg01-165A08
Chromosome1 (Build37)
Map Location 14,184,245 - 14,184,928
singlet/doubletsinglet
Overlap geneEya1
Upstream geneNcoa2, LOC665341, LOC100039812, EG621685, Tram1, Lactb2, Xkr9, LOC100039843, EG433273, LOC100039859, LOC100039869
Downstream geneLOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165A08.T7 (MSMg01no165_a08.b1)MSMg01-165A08.TJ (MSMg01no165_a08.g1)
ACCAG363306AG363307
length7291,152
length of high quality
(start - end)		689 (41 - 729)67 (136 - 202)
definitionCHROMAT_FILE: MSMg01no165_a08.b1 PHD_FILE: MSMg01no165_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:02 2005CHROMAT_FILE: MSMg01no165_a08.g1 PHD_FILE: MSMg01no165_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTTATTTTGTCCTGCATGCTATTAATAATGTCTAGAGGAGCCTACTTAT
ATCCCAGCCATGAAGTACACAGAAGTGAGAAGACGTGCAAGATAGTGGAA
GAGAAAGGATGCGAGGGGTGCCATGATCTTCCTCTCAGTGCTAGACTACT
CATATAACCCTGGTTTGGACACATACTGTGCTCTCAACTTCAGGCCTTGG
GGGTTAGGGAAGCAATGCCAATATAAGTCTCCTTCTGTCTCACTTAATTG
GTACCTTAGAAAAATTACATTAGGAGTGGCTAGTGCAATCCAGTGAAGCC
AGACCTTTGAAAACCTCTGCCATGACCCGAAGCTTCACAGCACAGTCCCT
TCCTTCTGTGCAATCAGGAATGGCCACTCTTGCAGGTACTGTCAGCCCTT
CCTTCCCCGTGATAGGTTTGTCCACAGCTTGTAACAGAGCCCATGGTGAG
CTTTTATTGATTTCTTTCTTTCTGTGAGTCCTCTGATGTCCTTCATATAA
GTCACCCTTTGAGTAACAGTAGCTGCCATTATTGAGCCCTTGTTACAGGC
AAGAGCCTGTCAAGTACTCTTTTCAGCCTTCCTAAAACTCTGCATCTAAC
AGACATGGAGACAGCTAACATGGAGACATCTGAGGATAACTTTGGGGTAG
CATGCCATATAATAATCTCTGTGGGGAAN

NTTATCTTNNNNAAATGAGGCGAGCCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCTACCGTTCTGAGAGACA
CCACCTTTTAAGCTATTAATAGATAAAGGGGTGCTAAGAGACCAAGCTGA
TTGGAATCCTAGAGGAGAAAGTTGGACAAGAGAGTCCCCTAATTTTGTTT
TCCTCCTCTAGACCTGCATGTGGGACATGAAAGAGAATGTTCTAGAATTG
TACCCCTCTATATGTAGTCCCACTGCCAAAGCATAAGCTAAGCTCTGGGT
GATTCCCAGTGGTAAGTCTCCAGCAGTGAGCTAATGGCTGAAATCAGAAG
TGAGATTGGAGTTACCACGCACACAGGTAAGATAGAACTGACAGTCTGAA
ACTGGGCCGAGGGAATGAAAACTTACCTTCTCAGATGATTTTACTTGGAT
CCAGAGTAAACCCACAGAATATCAAAATGTCTGAGATGTTACCCCAAAGT
TACTTGCCCTACCGAATTAAAAGACAATTAGTAACTAATGGAACCCAGGC
AAACCCTCTTGAAATGAATTAACTAATAGGAGTTTGCTACCGTCCACTTC
CAAGGACAGGTGGACGTTTTCTTTAATTAAAAATAAACAAACACGTAAAG
TAGAAACTTCCCTTATTGACCCCATAAAAGAACAGAAATAACATAAGAAT
GCGGATGGAGCCAAGCCATTTGATGCAGAAAGTCTAAAGAACCGCCCGAA
AAGAGATTTACCGAAATGTACCAGAGCCTTGACACTCCCTCTATCCGAGG
TCCAGGAAGGAAGTAATTTATGTTGGAAAAAGGATTGACAGGTGGGTCCG
CCCTTTAAGAAAGAATCCTTCCAGAGTTATGAAACCGATACTCTCCGATT
TTTTTTCCCATGCCCTCTTTCCCCAAGAGCCTTACCCTTTATCACCCAAC
CCCAACTCTTTACACAGGGGAGGAATTTGACCCATTTTCCCCTTTCCCAC
AATAAGTCCCCACTATTTTCCGAAAGGCTCTTTCACAAAAATTTTCTTGG
GGCCCCCTCCCCCCCCCGCGCCTCTTACATCCCCCGCGCCCCCTCTCCAC
ATTTCTCGGCCGCCCCCCCCCTCCTTTTATTTTCAACAACCCCTCCTCCC
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_a08.b1 MSMg01no165_a08.b1 CHROMAT_FILE:
MSMg01no165_a08.b1 PHD_FILE: MSMg01no165_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:02 2005
         (689 letters)



>mm_chr1_14184041_14185129
          Length = 1089

 Score = 1268 bits (656), Expect = 0.0
 Identities = 677/684 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttattttgtcctgcatgctattaataatgtctagaggagcctacttatatcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 205 gaattctcttattttgtcctgcatgctattaataatgtctagaggagcctatttatatcc 264

                                                                       
Query: 65  cagccatgaagtacacagaagtgagaagacgtgcaagatagtggaagagaaaggatgcga 124
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 265 cagccatgaagtacacagaagtgagaagacaagcaagatagtggaagagaaaggatgcga 324

                                                                       
Query: 125 ggggtgccatgatcttcctctcagtgctagactactcatataaccctggtttggacacat 184
           ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 325 ggggtgccatgatcttcctctcagtgctagaatactcacataaccctggtttggacacat 384

                                                                       
Query: 185 actgtgctctcaacttcaggccttgggggttagggaagcaatgccaatataagtctcctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actgtgctctcaacttcaggccttgggggttagggaagcaatgccaatataagtctcctt 444

                                                                       
Query: 245 ctgtctcacttaattggtaccttagaaaaattacattaggagtggctagtgcaatccagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgtctcacttaattggtaccttagaaaaattacattaggagtggctagtgcaatccagt 504

                                                                       
Query: 305 gaagccagacctttgaaaacctctgccatgacccgaagcttcacagcacagtcccttcct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaagccagacctttgaaaacctctgccatgacccgaagcttcacagcacagtcccttcct 564

                                                                       
Query: 365 tctgtgcaatcaggaatggccactcttgcaggtactgtcagcccttccttccccgtgata 424
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctgcgcaatcaggaatggccactcttgcaggtactgtcagcccttccttccccgtgata 624

                                                                       
Query: 425 ggtttgtccacagcttgtaacagagcccatggtgagcttttattgatttctttctttctg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggtttgtccacagcttgtaacagagcccatggtgagcttttattgatttctttctttctg 684

                                                                       
Query: 485 tgagtcctctgatgtccttcatataagtcaccctttgagtaacagtagctgccattattg 544
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cgagtcctctgatgtccttcatataagtcaccctttgagtaacagtagctgccattattg 744

                                                                       
Query: 545 agcccttgttacaggcaagagcctgtcaagtactcttttcagccttcctaaaactctgca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agcccttgttacaggcaagagcctgtcaagtactcttttcagccttcctaaaactctgca 804

                                                                       
Query: 605 tctaacagacatggagacagctaacatggagacatctgaggataactttggggtagcatg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tctaacagacatggagacagctaacatggagacatctgaggataactttggggtagcatg 864

                                   
Query: 665 ccatataataatctctgtggggaa 688
           ||||||||||||||||||||||||
Sbjct: 865 ccatataataatctctgtggggaa 888


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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