Query= MSMg01no165_b04.b1 MSMg01no165_b04.b1 CHROMAT_FILE:
MSMg01no165_b04.b1 PHD_FILE: MSMg01no165_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:06 2005
(665 letters)
>mm_chr1_72227770_72228837
Length = 1068
Score = 828 bits (428), Expect = 0.0
Identities = 447/454 (98%), Gaps = 3/454 (0%)
Strand = Plus / Minus
Query: 4 ggaattctccagtcgtcgcctccagtgcgtttgtcaacaagtaccagaaccttggggttt 63
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 455 ggaattctccagtcgtagcctccagtgtgtttgtcaacaagtaccagaaccttgggtttt 396
Query: 64 tttttttttt--ttctcttctcagctttctatgcaagtgagtgtccactttgaggcctag 121
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttttttttttcttctcttctcagctttctatgcaagtgagtgtccactttgaggcctag 336
Query: 122 ctaaactgggagtttttaaataaagcagatgttaggaggaattcagctgggagggggatg 181
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ctcaactgggagtttttaaataaagcagatgttaggaggaattcagctgggagggggatg 276
Query: 182 aatttaacctgtattgtg-ttttttttagtgttaagcactcatttaaacattgtcctatt 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aatttaacctgtattgtgtttttttttagtgttaagcactcatttaaacattgtcctatt 216
Query: 241 tatttttatgtatgtatgtatgtaggtgagacacgtgaacgccaaggaacacacatggag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 tatttttatgtatgtatgtatgtaggtgagacacgtgaacgccaaggaacacacatggag 156
Query: 301 gtcagaggacagtctctagagtcaattctctttttctgccatataggtattatgggttaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 gtcagaggacagtctctagagtcaattctctttttctgccatataggtattatgggttaa 96
Query: 361 attcaggttggcagcaagcaagtgcttttacgcactggagctatctcactagccccaaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 attcaggttggcagcaagcaagtgcttttacgcactggagctatctcactagccccaaag 36
Query: 421 cattcatttcttaacatttaattattattttttt 454
||||||||||||||||||||||||||||||||||
Sbjct: 35 cattcatttcttaacatttaattattattttttt 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1068
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1058
Effective search space: 692990
Effective search space used: 692990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no165_b04.g1 MSMg01no165_b04.g1 CHROMAT_FILE:
MSMg01no165_b04.g1 PHD_FILE: MSMg01no165_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:06 2005
(579 letters)
>mm_chr1_72123018_72123995
Length = 978
Score = 938 bits (485), Expect = 0.0
Identities = 532/555 (95%), Gaps = 15/555 (2%)
Strand = Plus / Plus
Query: 1 aataaaacaaaatgctcccttcatggaactgaggtgacattggaaaaaaaaatgaaatta 60
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 aataaagcaaaatgctcccttcatggaactgaggtgacattggaaaaaaaa-tgaaatta 259
Query: 61 gaatctggagacatgagggacagtttgctcatccactagcaagtcagggcaggggtggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gaatctggagacatgagggacagtttgctcatccactagcaagtcagggcaggggtggaa 319
Query: 121 gacttggggttgtggaaagggatcagaattttggtctctgtttgtcacagggaacacctg 180
||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 320 gacttgggggtgtggaaagggatcagaactttggtctctgtttgtcacaggaaacacctg 379
Query: 181 gcatctgggagccgaaaatcaatccaaaggttgtatcaattgtagaaaagaatcataatt 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcatctgggagccaaaaatcaatccaaaggttgtatcaattgtagaaaagaatcataatt 439
Query: 241 acaagtctccttgggagacttttcattcccatcatggggtggggaaaagcataggaaagg 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acaagtctccttgggaggcttttcattcccatcatggggtggggaaaagcataggaaagg 499
Query: 301 aagcacagtttccagtgagtttgtgatattttatgacagaaccagaccaaaaataggaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aagcacagtttccagtgagtttgtgatattttatgacagaaccagaccaaaaataggaaa 559
Query: 361 actctgatttctcttttagaaaatcaatctctctctctctctctct------------gt 408
| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 560 agtctgatttctcttttagaaaatcaatctctctctctctctctctctctctctgtgtgt 619
Query: 409 gtgtgtgtgtgtgtgtgtgtgtgtgtttctgtctctgtctctctgtctctgcctttctgt 468
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 620 gtgtgtgtgtgtgtgtgtgtgtgtgtttctgtctctgtctctctgtctctgtctttctgt 679
Query: 469 ctctatctctctgtctctctgactctgtctctctgtatctctctgactgtctctgtctct 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctctatctctctgtctctctgactctgtctctctgtatctctctgactgtctctgtctct 739
Query: 529 tctctctctctctct 543
|||| |||||||||
Sbjct: 740 -ctct-tctctctct 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 92
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 978
Length adjustment: 10
Effective length of query: 569
Effective length of database: 968
Effective search space: 550792
Effective search space used: 550792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
