BAC Information

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BAC

Clone NameMSMg01-165B11
Chromosome1 (Build37)
Map Location 24,670,821 - 24,671,153
singlet/doubletsinglet
Overlap genenone
Upstream geneB3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475, LOC665829
Downstream geneLmbrd1, 4930472D16Rik, LOC669171, Bai3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165B11.T7 (MSMg01no165_b11.b1)MSMg01-165B11.TJ (MSMg01no165_b11.g1)
ACCAG363357AG363358
length710710
length of high quality
(start - end)
344 (67 - 410)333 (75 - 407)
definitionCHROMAT_FILE: MSMg01no165_b11.b1 PHD_FILE: MSMg01no165_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:07 2005CHROMAT_FILE: MSMg01no165_b11.g1 PHD_FILE: MSMg01no165_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAA
TTCCACGGTTTGCTGTCTTACAATAAGGTCTTCAGTCCATTTGGAATTGA
TTTTTGAGCAGGGTAAGAGATATTGATCTAGTTTCTTTTACAAGTGAATA
TCTATTTTTCCAGCACTTTTTGATCATGACCTTTTCTTCCAAATACACAT
TTGACACTTTTGTCAAGAATTAGGTGGCTATAACGTGGTGGGTTTATTTC
TAAATTAATCTATCCCATTGGTCTCTATGTTTATTTTGTGCCTGTGCCAG
TACCTTACAGTTTTTAGTGTCACAGCTCTGTGCTATAGTTAATGCGTACA
TATTGCTCTTTCTGTTAGGATTACTTTGGCGATCTCAGAGGACGCTGCAT
TTCTATGAAGAGACCGCTTATCTGGGGGAGAATGTGATTGGAATTTTGAT
GGAATTGCATTGAATGTGCAGTTTGCTTTCTGCACGACTGCCAATTTTAT
AATACTAACCAATGGCAGCCTTTGTCTTTTAAGATACATTCTGAGATAGA
GGCTCAATATCACCATGTCCAGGGAATTTTCGAAGTAATCCCACTGAAGA
ATAGGGAGTTAAGACAGAATACAGACAGGGATTATGACTACGGGCGAATT
GCTTACATGATTTATGAATTTTTAGAACTGTTGATATCCAGTAAACGGCA
AAAACTTTTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGCATAGCTCCATAAAAACCCCTAGC
TTCCGAGCCTCTTGGCCGACATCTGTTATCTCCTGTGTGGGATGCATGTC
AGTCCAGAGCTCGGTCATTAAACTACCTCGTGTAATTCCATCAAGATGGT
CCTTCGTGATTCTTTGGGTGCCCGCCGAATTGGGAATTGAGTGGGGGTTT
CCCCACTAGGTTCTATCAATGTCACAGTAAGTGAACATGCTGGTTAATGA
GTACAGTTCTGGACAATCACAAAAAAATGCTGTTTTAATTAGATTCTTTT
TCTTAGTTATAAAGACAGAGGTTCCTGAGAATGCCTTAAGTCATGTGGAG
TTTATTAGAAGGCTCCCCCGCGGGAGTAAGTAAAACAGACATTGTGCTCA
TTCATTGTAGCTTCCTGCCAATTTAAGAAATGCATCATACCAGGCCCAGA
ATAAGAGCTAGACTCTTCCTTGGTAGAACTGAGTTTCATCAACTTCAGGA
ATGTAAAAAACCTATTCTTTCTTTCATCAATGTTCCACTCATAATATTTT
TATCCCTTATATAACTATCCTGTTGACTAAATTTCCATTTGTCTCCTTCT
CATTCGTAGCTTGCACTTCCTGCTTCTATCTCCTGGTGATGTTTTTACTC
CAGTATTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_b11.g1 MSMg01no165_b11.g1 CHROMAT_FILE:
MSMg01no165_b11.g1 PHD_FILE: MSMg01no165_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:07 2005
         (333 letters)



>mm_chr1_24670621_24671353
          Length = 733

 Score =  621 bits (321), Expect = 0.0
 Identities = 330/333 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcatagctccataaaaacccctagcttccgagcctcttggccgacatctgttatctcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcatagctccataaaaacccctagcttccgagcctcttggccgacatctgttatctcct 260

                                                                       
Query: 61  gtgtgggatgcatgtcagtccagagctcggtcattaaactacctcgtgtaattccatcaa 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtgggatgcatgtcagtccagagttcggtcattaaactacctcgtgtaattccatcaa 320

                                                                       
Query: 121 gatggtccttcgtgattctttgggtgcccgccgaattgggaattgagtgggggtttcccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 gatggtccttcgtgattctttgggtgcccgccgaattgggaattgagtggggggttcccc 380

                                                                       
Query: 181 actaggttctatcaatgtcacagtaagtgaacatgctggttaatgagtacagttctggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 actaggttctatcaatgtcacagtaagtgaacatgctggttaatgagtacagttctggat 440

                                                                       
Query: 241 aatcacaaaaaaatgctgttttaattagattctttttcttagttataaagacagaggttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatcacaaaaaaatgctgttttaattagattctttttcttagttataaagacagaggttc 500

                                            
Query: 301 ctgagaatgccttaagtcatgtggagtttatta 333
           |||||||||||||||||||||||||||||||||
Sbjct: 501 ctgagaatgccttaagtcatgtggagtttatta 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)