XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAAT
TCTGGAAATGACAAGATACTAGAAGTACAGAGACCACAAAACAGAATGGA
TTAGCAAAGAACTATATTTGGCATATAATAACCAATCATTAGACAAACAG
AATAAATAGATAGTAAAAGCAGCAATAAAAAAAGAACATGTAACATAAAA
AGCCAGATATATTTGAATTTCATCTGACTTCTCAGAGTCTAAAATTCAGA
AAGGATAGCACAGGTATGTTACATACTCAAAAAGACTATAGATACAAGCT
AAGATTACTATTATCTTGCAAAACTTCCAATCACCATAAATGGATAAACT
ACAACATTTTGTGGTAAAATAAATTATAAACAATCTAGATCTATACCGTA
CACACACACACACACACACACACACACACACGCACATGCACACACACACA
CAAATGCAACCATGTGGATGTTGTTAGAAAGAGAACTCCATTGTAAGGAG
ATTGACTACACATGAGAACACAAGAAATAATAATCTCAAACCAGCAAAAC
CAAAATAAGGGAAACACACACAGACACAGACACAAACACAAACACAAACA
CAAACATTCACCCATATTTACCACAAAAAAAAAAAACAAGGAAAACAAGA
GAAAAAAATAAATCAGGAATTAACAGGAATGGATCATTTATATGTCTCAT
TATCAATGATCTCAATT

GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTCTGTAGTCCAGACTGGTCTTGAACTCA
GAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGAATTAAAGGTGTGCACC
AGGTTATTTTTACTGGGCAAATCCTCAATACTCTGTAAATATTTACATTA
AAGGTAATTGTTGTTTCTGGTTATTAAATTTTTATTGCTAGACTCATACA
ACTAATGGTAATTACAATAATCTTATGTATTTGATATACTTATTTATCTG
ATCTCTTGAGTTCACTTTATTATTTCATAGTTTTACTAAACACATATAAC
ATATTCACATATATTTGAATTTTTCATGTAGATCTATATTGTGCTATGGA
TGTATGAAATATAAAAATATACTCCTTAAATTTAATGAGTGAATCTGAAC
TCATTGTATTGTATGAAAACAGTAACATTTAAAGAAAATGTGATTAGTCT
TCTTGAAACAAATCTGGTTCATGCTATTATAGATTAGAAAGAATTAATGT
TCTCCTCCTAAAGAGGAATATAAAATAATTTATTCTATTACTTGGCAAAG
TTGCCCTTCCTTTATCATGTTCAAATGATGATCATTATTTCATTTTACTT
TCTAGATAATTTTAAGGATTCCCTGAAATTATTTCTGCCTTTATGCAAAG
TGTGCCTGCTTN

Query= MSMg01no165_f04.g1 MSMg01no165_f04.g1 CHROMAT_FILE:
MSMg01no165_f04.g1 PHD_FILE: MSMg01no165_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:26 2005
         (640 letters)



>mm_chr1_143359237_143360276
          Length = 1040

 Score =  671 bits (347), Expect = 0.0
 Identities = 359/363 (98%), Gaps = 2/363 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtagtccagactggtcttgaactcagaaatccacctgcctctgcctcccaagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 actctgtagtccagactggtcttgaactcagaaatccacctgcctctgcctcccaagtgc 601

                                                                       
Query: 61  tggaattaaaggtgtgcaccaggttatttttactgggcaaatcctcaatactct-gtaaa 119
           |||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct: 600 tggaattaaaggtgtgcaccagattatttttactgggcaaatcctcaatact-tggtaaa 542

                                                                       
Query: 120 tatttacattaaaggtaattgttgtttctggttattaaatttttattgctagactcatac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tatttacattaaaggtaattgttgtttctggttattaaatttttattgctagactcatac 482

                                                                       
Query: 180 aactaatggtaattacaataatcttatgtatttgatatacttatttatctgatctcttga 239
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aactaatagtaattacaataatcttatgtatttgatatacttatttatctgatctcttga 422

                                                                       
Query: 240 gttcactttattatttcatagttttactaaacacatataacatattcacatatatttgaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gttcactttattatttcatagttttactaaacacatataacatattcacatatatttgaa 362

                                                                       
Query: 300 tttttcatgtagatctatattgtgctatggatgtatgaaatataaaaatatactccttaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tttttcatgtagatctatattgtgctatggatgtatgaaatataaaaatatactccttaa 302

              
Query: 360 att 362
           |||
Sbjct: 301 att 299


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)