BAC Information

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BAC

Clone NameMSMg01-165J03
Chromosome1 (Build37)
Map Location 95,473,453 - 95,584,635
singlet/doubletdoublet
Overlap geneFarp2, Stk25, Bok
Upstream geneOlfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2
Downstream geneThap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165J03.T7 (MSMg01no165_j03.b1)MSMg01-165J03.TJ (MSMg01no165_j03.g1)
ACCAG363686AG363687
length718710
length of high quality
(start - end)		675 (44 - 718)642 (69 - 710)
definitionCHROMAT_FILE: MSMg01no165_j03.b1 PHD_FILE: MSMg01no165_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:47 2005CHROMAT_FILE: MSMg01no165_j03.g1 PHD_FILE: MSMg01no165_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,473,453 - 95,474,123)(95,583,995 - 95,584,635)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATACGAAAGGCAAATGCTGTAGCATTGATATAAGATGTGAACCTTT
AAATTTTCAGTTTTTTTAAAATTTTATGTGTACATGTATTCTGCCTGCGT
TCATTTCTGTATACCACATGTGCGCTGTGCCACCACTGCCTGTTTTGTTT
TTGTTTTTAAAAATGGGTTTGTAGTGTCTTCACGGAGATAACTGCACATA
CCAATTTGTAGTTTCTGAACTGTAGAGCCCATGTGTATGTGAAGGTTTTA
CACGGCATCTTAGCTTTTTCTCCCATTGCTGTGATAAAATACCTGGCAAA
AGCAGCTGGAGGACGGGAGGAGGGCTGATTTGACTTACAGTTCCTGATTT
CAGTGCCTCACAGTGGGGAGTCAGAGCTGCAGGCTCTGCTCTAAAGTTAG
GAACAGTGGGAAGTTAGGCAGCATACCTCTCAGAGACACACCCAGAAGCT
AAATGATCCCTCACAGGCTTGTCCCCCAAGTGATTCCAGGTCCTGTCACA
TTGACAACTCTAACCTTCGTAATGTGGTAAACAACCTTAAAGTTCATGTG
GAAAATTGTATCCCTCTTGGGTTTCTTTCTTATTTTAATTACTGGTTGCT
TTTTCTCTGCCCATTTCTAGCTTCCCACCCTGTCTAGTCATATTCTTACT
TGAGCTTTTCTCATGGAT

TGCAGTGGGAGGCCTGGCGGCCGCCTGGATCGGACTGGGGGTGACCTATA
GAAGGTTGCGAGAAAATCACTTTTAACAGTCAGGACAGTACCAAACATAA
CCTGAACAAGAACACATGGGCATTTGAGCTCTCTCCCTCCGGGAATCCCC
TTAGCCATCTAGAAGGCTCTGAACTCCAGAGGGTGGGAACAGCACTGGGT
GATGGAAAAAGGCCTTAAAGTCTCTGTGTAATCAGAGGGCTCCTGCTGAG
CGCAAGGCTTTGCCCCTGCGCCTTTCTACAGACCAGGGTTCAAGGCTCTC
AGGACCTGTCAAAATGGATGNGAAGGCAGAAACTGCCTGGGTCAGACCCA
AGACAGGACTTTCCCTTTGCCACCCCAGTGCCCTCGGGACTTACAAGAGG
CCAACATGTCCTTTCTCCAGAGAGAGCCAATGGTCTCCTTTTGTCTGCCA
AGTTTAGCCAACCAAACCTCTCATTCACACCTTCCACATACCCAGAGATA
GCCCCCTTCTGTCCATGCACAGCCCTCCTGGGAACCCAACTCAGACTGAA
TGGACTCCACCTCCCTCTAACTCTTGAACAGGTCAGGTTTACACAGCCCT
GCTCCTTGAGGCCAGCCCAATACGAAGATGTGGGGTCTGTATAAAACAGC
ATGTGTGCACACATCTCCCAGGAAGCCAGGTCTTACAGGGCTCCCTCCAA
CCAGGAGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_j03.b1 MSMg01no165_j03.b1 CHROMAT_FILE:
MSMg01no165_j03.b1 PHD_FILE: MSMg01no165_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:47 2005
         (675 letters)



>mm_chr1_95473249_95474323
          Length = 1075

 Score = 1228 bits (635), Expect = 0.0
 Identities = 662/671 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatacgaaaggcaaatgctgtagcattgatataagatgtgaacctttaaatttt 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatacgaaaggtaaatgctgtagcattgatataagatgtgaacctttaaatttt 264

                                                                       
Query: 65  cagtttttttaaaattttatgtgtacatgtattctgcctgcgttcatttctgtataccac 124
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagttttttttaaattttatgtgtacatgtattctgcctgcgttcatttctgtataccac 324

                                                                       
Query: 125 atgtgcgctgtgccaccactgcctgttttgtttttgtttttaaaaatgggtttgtagtgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgtgcgctgtgccaccactgcctgttttgtttttgtttttaaaaatgggtttgtagtgt 384

                                                                       
Query: 185 cttcacggagataactgcacataccaatttgtagtttctgaactgtagagcccatgtgta 244
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttcatggagataactgcacataccaatttgtagtttctgaactgtagagcccatgtgta 444

                                                                       
Query: 245 tgtgaaggttttacacggcatcttagctttttctcccattgctgtgataaaatacctggc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtgaaggttttacacggcatcttagctttttctcccattgctgtgataaaatacctggc 504

                                                                       
Query: 305 aaaagcagctggaggacgggaggagggctgatttgacttacagttcctgatttcagtgcc 364
           ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaagcagctggagggcggaaggagggctgatttgacttacagttcctgatttcagtgcc 564

                                                                       
Query: 365 tcacagtggggagtcagagctgcaggctctgctctaaagttaggaacagtgggaagttag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcacagtggggagtcagagctgcaggctctgctctaaagttaggaacagtgggaagttag 624

                                                                       
Query: 425 gcagcatacctctcagagacacacccagaagctaaatgatccctcacaggcttgtccccc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcagcatacctctcagagacacacccagaagctaaatgatccctcacaggcttgtccccc 684

                                                                       
Query: 485 aagtgattccaggtcctgtcacattgacaactctaaccttcgtaatgtggtaaacaacct 544
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 685 aagtgattccaggtcctgtcacattgacagctctaaccttcgtaatgtggtaaacaacct 744

                                                                       
Query: 545 taaagttcatgtggaaaattgtatccctcttgggtttctttcttattttaattactggtt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 745 taaagttcatgtggaaaattgtatccctcttgggtttctttcttattttaattgctggtt 804

                                                                       
Query: 605 gctttttctctgcccatttctagcttcccaccctgtctagtcatattcttacttgagctt 664
           |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 805 gcttttcctctgcccatttctagcttcccaccctgtctggtcatattcttacttgagctt 864

                      
Query: 665 ttctcatggat 675
           |||||||||||
Sbjct: 865 ttctcatggat 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no165_j03.g1 MSMg01no165_j03.g1 CHROMAT_FILE:
MSMg01no165_j03.g1 PHD_FILE: MSMg01no165_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:47 2005
         (642 letters)



>mm_chr1_95583795_95584836
          Length = 1042

 Score = 1122 bits (580), Expect = 0.0
 Identities = 627/643 (97%), Gaps = 4/643 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttttaacagtcaggacagtaccaaacataacctgaacaagaacacatgggcatttgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 acttttaacagtcaggacagtaccaaacataacctgaacaagaacacatgggcatttgag 782

                                                                       
Query: 61  ctctctccctccgggaatccccttagccatctagaaggctctgaactccagagggtggga 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ctctctccctctgggaatccccttagccatctagaaggctctgaactccagagggtggga 722

                                                                       
Query: 121 acagcactgggtgatggaaaaaggccttaaagtctctgtgtaatcagagggctcctgctg 180
           ||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 721 acagcactgggtgatgggaaaaggccttaaagtctctgagtactcagagggctcctgctg 662

                                                                       
Query: 181 agcgcaaggctttgcccctgcgcctttctacagaccagggttcaaggctctcaggacctg 240
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 agcgcaaggctctgcgcctgcgcctttctacagaccagggttcaaggctctcaggacctg 602

                                                                       
Query: 241 tcaaaatgga-tgngaaggcagaaactgcctgggtcagacccaagacaggactttccctt 299
           |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tcaaaa-ggactgtgaaggcagaaactgcctgggtcagacccaagacaggactttccctt 543

                                                                       
Query: 300 tgccaccccagtgccctcgggacttacaagaggccaacatgtcctttctccag-agagag 358
           |||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 542 tgccacaccagtgccctcgggacttacaagaggccaacatgtcctttctccagca-agag 484

                                                                       
Query: 359 ccaatggtctccttttgtctgccaagtttagccaaccaaacctctcattcacaccttcca 418
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 483 ccaatggtctccttttgtctgccaagtttacccaaccaaacctctcattcacaccttcca 424

                                                                       
Query: 419 catacccagagatagcccccttctgtccatgcacagccctcctgggaacccaactcagac 478
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 423 catacccagagatagcccccttctgtccatgcacagccctcctgagaacccaactcagac 364

                                                                       
Query: 479 tgaatggactccacctccctctaactcttgaacaggtcaggtttacacagccctgctcct 538
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 363 tgaatggactccacctccctctaactcttgaacaggccaggtttacacagccctgctcct 304

                                                                       
Query: 539 tgaggccagcccaatacgaagatgtggggtctgtataaaacagcatgtgtgcacacatct 598
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 303 tgaggccagcccaatacgaagatgtggagtctgtataaaacagcatgtgtgcacacatct 244

                                                      
Query: 599 cccaggaagccaggtcttacagggctccctccaaccaggagaa 641
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 cccaggaagccaggtcttacagggctccctccaaccaggagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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