Query= MSMg01no165_l13.b1 MSMg01no165_l13.b1 CHROMAT_FILE:
MSMg01no165_l13.b1 PHD_FILE: MSMg01no165_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:59 2005
(615 letters)
>mm_chr1_12390284_12391298
Length = 1015
Score = 1087 bits (562), Expect = 0.0
Identities = 592/604 (98%), Gaps = 6/604 (0%)
Strand = Plus / Plus
Query: 5 gaattccaggactaccccagtgagactggaggtaggaataggagagaatagctggaagct 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggactaccacagtgagactggaggtaggaataggagagaatagctggaagct 264
Query: 65 tatgatgatcaaggtaatcaacaacagacgctgtctccaacaaggcagaagatgaggact 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatgatgatcaaggcaatcaacaacagacgctgtctccaacaaggcagaagatgaggact 324
Query: 125 agcgtctaaggttggtctgtcatttctgtatgcacggcacagaatgcatatgtctgtact 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcgtctaaggttggtctgtcatttctgtatgcacggcacagaatgcatatgtctgtact 384
Query: 185 cacacatggacacacacatacacacacatcacacacaggcacaaagattattctttaaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacacatggacacacacatacacacacatcacacacaggcacaaagattattctttaaga 444
Query: 245 aattatcaatattaacaatacagttgttaaagaaatctgaattgttataagcaatcaata 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aattatcaatattaacaatacagttgttaaagaaatctgaattgttataagcaatcaata 504
Query: 305 taaaaattaacatttttctttaaaaatacactaggaagagggttggggtgctttatcagg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taaaaattaacatttttctttaaaaatacactaggaagagggttggggtgctttatcagg 564
Query: 365 tcgttcccg--ccccacaaggcatgtaaatgcctcacaatttattctgccccctaaatat 422
|||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcgttcatgatc---acaaggcatgtaaatgcctcacaatttattctgccccctaaatat 621
Query: 423 tgttagttcttcatgatattttattaaagaatttttttaaattttt-aaaattttataga 481
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 622 tgttagttcttcatgatattttattaaagaatttttttaattttttgaaaattttataga 681
Query: 482 tgcataaagtgaatttttatcatatttgctcctgctcctcccaaattcaacccctctccc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tgcataaagtgaatttttatcatatttgctcctgctcctcccaaattcaacccctctccc 741
Query: 542 aactttatgctctctctcactctcacgctctctcgctctctcgatctctctctctctctc 601
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aactttatgctctctctcgctctcacgctctctcgctctctcgatctctctctctctctc 801
Query: 602 tctc 605
||||
Sbjct: 802 tctc 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no165_l13.g1 MSMg01no165_l13.g1 CHROMAT_FILE:
MSMg01no165_l13.g1 PHD_FILE: MSMg01no165_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:00 2005
(605 letters)
>mm_chr1_12528147_12529151
Length = 1005
Score = 909 bits (470), Expect = 0.0
Identities = 476/478 (99%)
Strand = Plus / Minus
Query: 1 ataatcttcctgtcttagaggacagcagttttaaataaaggatgagaatgaggcatgaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ataatcttcctgtcttagaggacagcagttttaaataaaggatgagaatgaggcatgaaa 419
Query: 61 caaataagataaatgaaaagattaactgctattagacaagtaaagcctcacatctaaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 caaataagataaatgaaaagattaactgctattagacaagtaaagcctcacatctaaagt 359
Query: 121 atgttattaaaatgggaaaggcaagaaacaaagttcccaggaggctctaacctgatggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 atgttattaaaatgggaaaggcaagaaacaaagttcccaggaggctctaacctgatggaa 299
Query: 181 ggtctggattttcaaatgtgatataaggtaggaagactagaactcagaaactaggcttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ggtctggattttcaaatgtgatataaggtaggaagactagaactcagaaactaggcttga 239
Query: 241 atggtatttattattcatgtggtttacccaaatcaccttttctattttgtattagataat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 atggtatttattattcatgtggtttacccaaatcaccttttctattttgtattagataat 179
Query: 301 ttctttatttaaatttcaaattttatcccctttcctcattccccctctgaaaatcccctt 360
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 178 ttctttatttaaatttcaaattttatcccctttcctcatttcccttctgaaaatcccctt 119
Query: 361 atcccatcccacctccacctgctcactaacccacctaactcccacttccctgtcctggca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 atcccatcccacctccacctgctcactaacccacctaactcccacttccctgtcctggca 59
Query: 421 ttcccctacactggggcccttctcaggaccaagggtctctcctctcattgaagtccca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 ttcccctacactggggcccttctcaggaccaagggtctctcctctcattgaagtccca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
